Jatropha Genome Database

JcCB0189561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0189561.10 + phase: 0 /partial
         (128 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g00270.1                                                       226   4e-60
Glyma06g00320.1                                                       179   5e-46

>Glyma04g00270.1 
          Length = 396

 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/116 (93%), Positives = 113/116 (97%)

Query: 1   GLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNESINGKLLTFAGPRAWT 60
           GLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIA+RN+ +NGKLLTFAGPRAWT
Sbjct: 229 GLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIAIRNDKLNGKLLTFAGPRAWT 288

Query: 61  TQEVITLCERLAGQDANVTTVPVSILRLTRQLTRIFEWTNDVADRLAFSEVITSHS 116
           TQEVITLCERLAGQDANVTTVPVSILRLTRQLTR FEWTNDVADRLAFSEV+TS +
Sbjct: 289 TQEVITLCERLAGQDANVTTVPVSILRLTRQLTRFFEWTNDVADRLAFSEVLTSDT 344


>Glyma06g00320.1 
          Length = 315

 Score =  179 bits (455), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 85/89 (95%), Positives = 88/89 (98%)

Query: 1   GLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNESINGKLLTFAGPRAWT 60
           GLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIA+RN+ +NGKLLTFAGPRAWT
Sbjct: 137 GLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIAIRNDKLNGKLLTFAGPRAWT 196

Query: 61  TQEVITLCERLAGQDANVTTVPVSILRLT 89
           TQEVITLCERLAGQDANVTTVPVSILRLT
Sbjct: 197 TQEVITLCERLAGQDANVTTVPVSILRLT 225