Jatropha Genome Database

JcCB0186601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186601.10 - phase: 0 
         (63 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g02700.1                                                        72   9e-14
Glyma06g02720.1                                                        71   2e-13
Glyma01g37150.1                                                        67   6e-12

>Glyma04g02700.1 
          Length = 209

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 45/50 (90%), Gaps = 2/50 (4%)

Query: 1  MDTEEGVVVIKRAEIDTRPPFRSVKEAVTLFGEKVLAGELY--ANKLKEV 48
          M+ E GV+++++AEIDTR PFRSVKEAV+LFGEKVLAGE+Y  ANKLK++
Sbjct: 1  MNMEGGVLLVRKAEIDTRAPFRSVKEAVSLFGEKVLAGEVYASANKLKKI 50


>Glyma06g02720.1 
          Length = 197

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 44/47 (93%), Gaps = 2/47 (4%)

Query: 4  EEGVVVIKRAEIDTRPPFRSVKEAVTLFGEKVLAGELY--ANKLKEV 48
          E+GV+++++AEIDTR PFRSVKEAV+LFGEKVLAGE+Y  ANKLK++
Sbjct: 2  EDGVMLVRKAEIDTRAPFRSVKEAVSLFGEKVLAGEVYASANKLKKI 48


>Glyma01g37150.1 
          Length = 198

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 37/41 (90%)

Query: 10 IKRAEIDTRPPFRSVKEAVTLFGEKVLAGELYANKLKEVII 50
          ++RAEIDTR PF+SVKEAV LFGEKVL GE+YANKLKE+ +
Sbjct: 1  MERAEIDTRAPFKSVKEAVMLFGEKVLVGEIYANKLKEMRV 41