Jatropha Genome Database

JcCB0186451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186451.10 - phase: 0 
         (301 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g43700.1                                                       404   e-113
Glyma18g09420.1                                                       271   8e-73

>Glyma08g43700.1 
          Length = 305

 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/297 (65%), Positives = 232/297 (78%), Gaps = 1/297 (0%)

Query: 1   MGFPLVLSWGSHIMARSFCDYSIKLRSFNENERFGGVKVRSSNFKPSTRRISLCKNKLVD 60
           MGF +  S G++++ R   +  IK +     E+   +  + S  K     I   K++  D
Sbjct: 1   MGFSVAASLGTYVVLRDTHETRIKCQFLCRKEQNSRIGFKFSKHKAIQSAIFFSKHEFTD 60

Query: 61  FDERTSPNEVRREIERCYNLIQRLGRGVVYLGSSRMGPDHPHYLQVLELGREVAKLLDCT 120
            DER S +EV+ EI++CY LI RLGRGVVYLGSSRMGP H HY+Q  EL +E+A LLDCT
Sbjct: 61  LDERKSSDEVKEEIKKCYELINRLGRGVVYLGSSRMGPSHSHYVQAQELAKEIANLLDCT 120

Query: 121 SWTGAGPGLMDAAIKGALEAGKPVGGFKIAKEAGEWTASNFHAYLPSETYLTCRFFSARK 180
           SW+GAGPGLMDA  +G++ AGKPVGGFKI +EAGEWTASNFH YLPSE YLT RFFSARK
Sbjct: 121 SWSGAGPGLMDAVTQGSMLAGKPVGGFKIGREAGEWTASNFHPYLPSENYLTFRFFSARK 180

Query: 181 HGLVDAAVRNNSSDKTAVVALPGGIGTLDEMFEILALIQLERIGSELPVPFIVMNYDSFY 240
           HGLVDA VRNNS DKTAVVALPGGIGTLDE+FEILALIQLERIGS+ PVPF++MNYDSFY
Sbjct: 181 HGLVDAVVRNNSFDKTAVVALPGGIGTLDEVFEILALIQLERIGSKFPVPFLLMNYDSFY 240

Query: 241 QKLLDFIQNCEDWGTVSRGEVASLWKVCNNNSDALAYLTDFYNIHSSSDEDRHDKKL 297
            KLL+F+ +CE WGTVS+GEVASLWKVCN+NS+ALAYL +FY I SSSD+ ++  KL
Sbjct: 241 SKLLEFLNDCEGWGTVSKGEVASLWKVCNSNSEALAYLEEFYGI-SSSDKSKNVTKL 296


>Glyma18g09420.1 
          Length = 200

 Score =  271 bits (692), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 140/217 (64%), Positives = 160/217 (73%), Gaps = 26/217 (11%)

Query: 71  RREIERCYNLIQRLGRGVVYLGSSRMGPDHPHYLQVLELGRE--------VAKLLDCTSW 122
           + EI++CY LI R+GRGVVYLGSSRMGP H HY+Q  +L +E        +  LLDCT+W
Sbjct: 1   KEEIKKCYELINRVGRGVVYLGSSRMGPSHSHYVQAQDLAKEATYLLVCIIENLLDCTTW 60

Query: 123 TGAGPGLMDAAIKGALEAGKPVGGFKIAKEAGEWTASNFHAYLPSETYLTCRFFSARKHG 182
           +G GPGLMDA  +GA+ AGKPVGGFKI +EAGEWTASNFH YL SE YLTCRFF ARKHG
Sbjct: 61  SG-GPGLMDAVTEGAMLAGKPVGGFKIGREAGEWTASNFHPYLSSENYLTCRFFPARKHG 119

Query: 183 LVDAAVRNNSSDKTAVVALPGGIGTLDEMFEILALIQLERIGSELPVPFIVMNYDSFYQK 242
           LVDA VRNNS DKTAVVALP GI TLDE+FEILALIQLE IGS+L               
Sbjct: 120 LVDAVVRNNSFDKTAVVALPCGIDTLDEVFEILALIQLEWIGSKL--------------H 165

Query: 243 LLDFIQNCEDWGTVSRGEVASLWKVCNNNSDALAYLT 279
           LL+F+ +CE WGTVS+GEVASLWK    NS A   +T
Sbjct: 166 LLEFLNDCEGWGTVSKGEVASLWK---KNSMAFLLVT 199