Jatropha Genome Database

JcCB0181921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0181921.10 - phase: 0 /pseudo
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g30190.1                                                        77   3e-15
Glyma08g13350.1                                                        76   9e-15
Glyma04g02250.1                                                        56   8e-09
Glyma06g02310.1                                                        56   1e-08
Glyma11g08640.2                                                        53   6e-08
Glyma11g08640.1                                                        53   7e-08
Glyma01g36680.1                                                        50   6e-07
Glyma01g36680.2                                                        50   6e-07

>Glyma05g30190.1 
          Length = 908

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 56/88 (63%), Gaps = 9/88 (10%)

Query: 1  MGSGSPNSQITPYTGATTSVEPSFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCS 60
          +   SPN +     G      P FLHG+LDL IIEAKSLPN+DL +E IR+C T+   C 
Sbjct: 7  ISQSSPNREYEGLNG------PVFLHGDLDLLIIEAKSLPNLDLSSETIRKCITMGNMCH 60

Query: 61 DPCGQKGVK-HSGKNSMITSDPYC-ICL 86
           P   KG+K HSGK+ MITSDPY  +C+
Sbjct: 61 PPF-IKGLKTHSGKDKMITSDPYVSVCI 87


>Glyma08g13350.1 
          Length = 849

 Score = 75.9 bits (185), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 48/65 (73%), Gaps = 3/65 (4%)

Query: 24 FLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPCGQKGVK-HSGKNSMITSDPY 82
          FLHG+LDL I+EAKSLPN+DL  E +R+C T+   C  P   KG+K HSGK+ MITSDPY
Sbjct: 2  FLHGDLDLLIVEAKSLPNLDLSTEAVRKCITMGNMCHPPF-IKGLKTHSGKDKMITSDPY 60

Query: 83 C-ICL 86
            +C+
Sbjct: 61 VSVCI 65


>Glyma04g02250.1 
          Length = 867

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 24 FLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPCGQKGVKHSGKN---SMITSD 80
          +LHG LDL I EA+ LPNMD+ +E +RR F+   +CS     K  +   ++    +ITSD
Sbjct: 10 YLHGTLDLVIEEARFLPNMDMLSERVRRFFSALNTCSASISGKRKQQQARHRHRKIITSD 69

Query: 81 PYC-ICL 86
          PY  +CL
Sbjct: 70 PYVTVCL 76


>Glyma06g02310.1 
          Length = 847

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 24 FLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDP-CGQKGVKHS--GKNSMITSD 80
          +LHG LDL I +A+ LPNMD+ +E +RR F+   +CS    G++  +H+      +ITSD
Sbjct: 10 YLHGTLDLVIEDARFLPNMDMLSERVRRFFSALNTCSASITGKRKQRHARHRHRKIITSD 69

Query: 81 PYC-ICL 86
          PY  +CL
Sbjct: 70 PYVTVCL 76


>Glyma11g08640.2 
          Length = 803

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 12/71 (16%)

Query: 23 SFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCS-----------DPCGQKGVKHS 71
          ++LHG+LDL IIEA+ LPNMD+ +E +RRC T   +             D   Q+   H 
Sbjct: 11 TYLHGDLDLKIIEARHLPNMDIFSERLRRCVTACDTIKFHSDAPAAADGDGGSQRTRTHH 70

Query: 72 GKNSMITSDPY 82
           +  +ITSDPY
Sbjct: 71 HRR-IITSDPY 80


>Glyma11g08640.1 
          Length = 865

 Score = 53.1 bits (126), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 12/71 (16%)

Query: 23 SFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCS-----------DPCGQKGVKHS 71
          ++LHG+LDL IIEA+ LPNMD+ +E +RRC T   +             D   Q+   H 
Sbjct: 11 TYLHGDLDLKIIEARHLPNMDIFSERLRRCVTACDTIKFHSDAPAAADGDGGSQRTRTHH 70

Query: 72 GKNSMITSDPY 82
           +  +ITSDPY
Sbjct: 71 HRR-IITSDPY 80


>Glyma01g36680.1 
          Length = 868

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 6/75 (8%)

Query: 14 TGATTSVEPSFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSC---SDPCGQKGVKH 70
          TG       ++LHG+LDL IIEA+ LPNMD+ +E +RRC T   +    S+     G   
Sbjct: 4  TGGGDDNGVTYLHGDLDLKIIEARHLPNMDIFSERLRRCVTACDTIKFHSEAPAGGGGAG 63

Query: 71 SGKN---SMITSDPY 82
            K+    +ITSDPY
Sbjct: 64 QRKHHHPRIITSDPY 78


>Glyma01g36680.2 
          Length = 704

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 6/75 (8%)

Query: 14 TGATTSVEPSFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSC---SDPCGQKGVKH 70
          TG       ++LHG+LDL IIEA+ LPNMD+ +E +RRC T   +    S+     G   
Sbjct: 4  TGGGDDNGVTYLHGDLDLKIIEARHLPNMDIFSERLRRCVTACDTIKFHSEAPAGGGGAG 63

Query: 71 SGKN---SMITSDPY 82
            K+    +ITSDPY
Sbjct: 64 QRKHHHPRIITSDPY 78