Jatropha Genome Database

JcCB0175111.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0175111.20 - phase: 0 /partial
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g17760.1                                                       188   9e-49
Glyma15g41370.1                                                       186   6e-48

>Glyma08g17760.1 
          Length = 379

 Score =  188 bits (478), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 97/110 (88%)

Query: 1   MDVFSSCRFDGAAPEPRKGIKSGHIPGSKCIPFPQMLDASQTLLPADELKKRFDQEGISL 60
           +D  S  RFDGA  EPRKGI+SGH+PGSKCIPF Q+LD+SQTLLPADELKKRF+QEGIS+
Sbjct: 270 IDARSKPRFDGAVQEPRKGIRSGHVPGSKCIPFAQLLDSSQTLLPADELKKRFEQEGISV 329

Query: 61  ESSIVTSCGTGVTACILALGLHRLGKQDVAVYDGSWTEWGAHPDTPVDTS 110
           ES  VTSCGTGVTACILALGLHRLGK DVAVYDGSWTEWGA  DT VDTS
Sbjct: 330 ESPAVTSCGTGVTACILALGLHRLGKSDVAVYDGSWTEWGAQSDTLVDTS 379


>Glyma15g41370.1 
          Length = 384

 Score =  186 bits (471), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 95/109 (87%)

Query: 1   MDVFSSCRFDGAAPEPRKGIKSGHIPGSKCIPFPQMLDASQTLLPADELKKRFDQEGISL 60
           +D  S  RFDG   EPRKGI+SGH+PGSKCIPF Q+LD+SQTLLPADELKKRF+QEGISL
Sbjct: 275 IDARSKPRFDGTVQEPRKGIRSGHVPGSKCIPFAQLLDSSQTLLPADELKKRFEQEGISL 334

Query: 61  ESSIVTSCGTGVTACILALGLHRLGKQDVAVYDGSWTEWGAHPDTPVDT 109
           ES  VTSCGTGVTACILALGLHRL K DVAVYDGSWTEWGA  +TPVDT
Sbjct: 335 ESPAVTSCGTGVTACILALGLHRLRKSDVAVYDGSWTEWGAQSNTPVDT 383