Jatropha Genome Database

JcCB0174071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174071.10 - phase: 0 /pseudo
         (158 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g08810.1                                                       216   7e-57
Glyma04g08710.1                                                       212   1e-55

>Glyma06g08810.1 
          Length = 983

 Score =  216 bits (550), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 103/138 (74%), Positives = 115/138 (83%)

Query: 1   MDVAIRVXXXXXXXXXXXXXXXXXYEDQVGLMDWHQQYIGKVKDAVFHTQKTGRKRVVVS 60
           M +AIRV                 YEDQVGLMDWHQQYIGKVK A+FHTQK+GRKRV+VS
Sbjct: 1   MAMAIRVFLILLLSLSSTHLSYSLYEDQVGLMDWHQQYIGKVKHALFHTQKSGRKRVLVS 60

Query: 61  TEENVIASLDLRHGEIFWRHVLGTDDVIDGIDIALGKYVITLSSEGSILRAWNLPDGQMV 120
           TEENV+ASLDLRHGEIFWRHVLGT+D++DG+DIALGKYVITLSS+GSILRAWNLPDGQMV
Sbjct: 61  TEENVVASLDLRHGEIFWRHVLGTNDIVDGLDIALGKYVITLSSDGSILRAWNLPDGQMV 120

Query: 121 WESFLQGPNHSKSLLLVP 138
           WESFLQG   SKS+L +P
Sbjct: 121 WESFLQGSVASKSILYIP 138


>Glyma04g08710.1 
          Length = 983

 Score =  212 bits (540), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 113/138 (81%)

Query: 1   MDVAIRVXXXXXXXXXXXXXXXXXYEDQVGLMDWHQQYIGKVKDAVFHTQKTGRKRVVVS 60
           M + IRV                 YEDQVGLMDWHQQYIGKVK A+FHTQK+GRKRV+VS
Sbjct: 1   MAMTIRVFLILLLFLSSTHLSYSLYEDQVGLMDWHQQYIGKVKHALFHTQKSGRKRVLVS 60

Query: 61  TEENVIASLDLRHGEIFWRHVLGTDDVIDGIDIALGKYVITLSSEGSILRAWNLPDGQMV 120
           TEENV+ASLDLR GEIFWRHVLGT+DV+DG+DIALGKYVITLSS+GSILRAWNLPDGQMV
Sbjct: 61  TEENVVASLDLRRGEIFWRHVLGTNDVVDGLDIALGKYVITLSSDGSILRAWNLPDGQMV 120

Query: 121 WESFLQGPNHSKSLLLVP 138
           WESFLQG   SKS+L +P
Sbjct: 121 WESFLQGSVASKSILYIP 138