Jatropha Genome Database

JcCB0173711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0173711.10 + phase: 2 /partial
         (174 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g19450.1                                                       218   2e-57
Glyma10g05090.1                                                       211   4e-55
Glyma18g17440.1                                                        54   9e-08

>Glyma13g19450.1 
          Length = 464

 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/154 (68%), Positives = 114/154 (74%)

Query: 21  QLQACLDAVMQALAKSVAWDGEGATCLIEVTVTGAESEVKAAKIXXXXXXXXXXXXXXYG 80
           QLQACLDAVMQ LAKS+AWDGEGATCL+EV VTGA SE +AAK+              YG
Sbjct: 311 QLQACLDAVMQGLAKSIAWDGEGATCLVEVCVTGANSEAEAAKVARSVASSSLVKAAIYG 370

Query: 81  RDPNWGRXXXXXXXXXXPFHQNNLRVMLGDILLMDNGQPLAFDRAAASNYLRKAGETHGT 140
           RDPNWGR           FHQ+ LRV LGDILLMD G+P  FDR AAS+YLRKAGETH T
Sbjct: 371 RDPNWGRIAAAAGYSGVSFHQDLLRVELGDILLMDGGEPQLFDRHAASSYLRKAGETHDT 430

Query: 141 VGIYISVGDGSGHGQAWGCDLSYDYVKINAEYTT 174
           V I ISVG+G G GQAWGCDLSYDYVKINAEYTT
Sbjct: 431 VKIQISVGNGPGRGQAWGCDLSYDYVKINAEYTT 464


>Glyma10g05090.1 
          Length = 430

 Score =  211 bits (536), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/154 (67%), Positives = 114/154 (74%), Gaps = 2/154 (1%)

Query: 21  QLQACLDAVMQALAKSVAWDGEGATCLIEVTVTGAESEVKAAKIXXXXXXXXXXXXXXYG 80
           QLQACLDAVMQ LAKS+AWDGEGATCL+EV+VTGA SE +AAK+              YG
Sbjct: 279 QLQACLDAVMQGLAKSIAWDGEGATCLVEVSVTGANSEAEAAKVARSVASSSLAAV--YG 336

Query: 81  RDPNWGRXXXXXXXXXXPFHQNNLRVMLGDILLMDNGQPLAFDRAAASNYLRKAGETHGT 140
           RDPNWGR           FHQ+ LRV LGDILLMD G+P  FDR  AS+YLR+AGETH T
Sbjct: 337 RDPNWGRIAAAAGYSGVSFHQDLLRVELGDILLMDGGEPQLFDRDVASSYLRRAGETHDT 396

Query: 141 VGIYISVGDGSGHGQAWGCDLSYDYVKINAEYTT 174
           V I ISVG+G G GQAWGCDLSYDYVKINAEYTT
Sbjct: 397 VRIQISVGNGPGCGQAWGCDLSYDYVKINAEYTT 430


>Glyma18g17440.1 
          Length = 123

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 28/46 (60%)

Query: 80  GRDPNWGRXXXXXXXXXXPFHQNNLRVMLGDILLMDNGQPLAFDRA 125
           G +PNWGR           FHQ+ LRV LGDILLM  G+P  FDRA
Sbjct: 37  GNNPNWGRIAAAACYSGVSFHQDLLRVELGDILLMYGGEPQLFDRA 82