Jatropha Genome Database

JcCB0173481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0173481.10 - phase: 1 /partial
         (161 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g24400.1                                                       236   7e-63
Glyma20g24400.2                                                       236   9e-63
Glyma20g24400.3                                                       233   9e-62
Glyma10g42630.1                                                       232   1e-61
Glyma10g42630.2                                                       155   2e-38

>Glyma20g24400.1 
          Length = 421

 Score =  236 bits (602), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 123/135 (91%)

Query: 3   FCEWNMGKVEDGSDSRAVQVVDDKHWDDLVIIIAVVSSRQKETSSTTGMRETVETSLLLQ 62
           F +W MGK ++GSDS AVQ+ D+KHWDDLVI+IAVVSSRQKETSSTTGMRE+VETSLLLQ
Sbjct: 175 FVKWIMGKEDNGSDSLAVQLTDEKHWDDLVIVIAVVSSRQKETSSTTGMRESVETSLLLQ 234

Query: 63  HRAKEVVPKRIIKMEEAIKNRDFASFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 122
           HRAKE+VPKRI++MEEAIKNRDFASF+QLTCADSNQFHAVCLDT PPIFYMNDTSHRIIS
Sbjct: 235 HRAKEIVPKRILQMEEAIKNRDFASFSQLTCADSNQFHAVCLDTCPPIFYMNDTSHRIIS 294

Query: 123 CIEKWNCCEGTPQVG 137
            +EKWN  E  PQV 
Sbjct: 295 IVEKWNRSEEAPQVA 309


>Glyma20g24400.2 
          Length = 349

 Score =  236 bits (601), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 123/135 (91%)

Query: 3   FCEWNMGKVEDGSDSRAVQVVDDKHWDDLVIIIAVVSSRQKETSSTTGMRETVETSLLLQ 62
           F +W MGK ++GSDS AVQ+ D+KHWDDLVI+IAVVSSRQKETSSTTGMRE+VETSLLLQ
Sbjct: 175 FVKWIMGKEDNGSDSLAVQLTDEKHWDDLVIVIAVVSSRQKETSSTTGMRESVETSLLLQ 234

Query: 63  HRAKEVVPKRIIKMEEAIKNRDFASFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 122
           HRAKE+VPKRI++MEEAIKNRDFASF+QLTCADSNQFHAVCLDT PPIFYMNDTSHRIIS
Sbjct: 235 HRAKEIVPKRILQMEEAIKNRDFASFSQLTCADSNQFHAVCLDTCPPIFYMNDTSHRIIS 294

Query: 123 CIEKWNCCEGTPQVG 137
            +EKWN  E  PQV 
Sbjct: 295 IVEKWNRSEEAPQVA 309


>Glyma20g24400.3 
          Length = 420

 Score =  233 bits (593), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 123/135 (91%), Gaps = 1/135 (0%)

Query: 3   FCEWNMGKVEDGSDSRAVQVVDDKHWDDLVIIIAVVSSRQKETSSTTGMRETVETSLLLQ 62
           F +W MGK ++GSDS AVQ+ D+KHWDDLVI+IAVVSSRQKETSSTTGMRE+VETSLLLQ
Sbjct: 175 FVKWIMGK-DNGSDSLAVQLTDEKHWDDLVIVIAVVSSRQKETSSTTGMRESVETSLLLQ 233

Query: 63  HRAKEVVPKRIIKMEEAIKNRDFASFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 122
           HRAKE+VPKRI++MEEAIKNRDFASF+QLTCADSNQFHAVCLDT PPIFYMNDTSHRIIS
Sbjct: 234 HRAKEIVPKRILQMEEAIKNRDFASFSQLTCADSNQFHAVCLDTCPPIFYMNDTSHRIIS 293

Query: 123 CIEKWNCCEGTPQVG 137
            +EKWN  E  PQV 
Sbjct: 294 IVEKWNRSEEAPQVA 308


>Glyma10g42630.1 
          Length = 420

 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 122/135 (90%)

Query: 3   FCEWNMGKVEDGSDSRAVQVVDDKHWDDLVIIIAVVSSRQKETSSTTGMRETVETSLLLQ 62
           F +W MGK ++GSDS AVQ+ D+KHWDDLVI+IAVVSSRQKETSST+GM E+VETSLLLQ
Sbjct: 174 FVKWIMGKEDNGSDSLAVQLADEKHWDDLVIVIAVVSSRQKETSSTSGMCESVETSLLLQ 233

Query: 63  HRAKEVVPKRIIKMEEAIKNRDFASFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 122
           HRAKE+VPKRI++MEEAIKNRDFASF+QLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS
Sbjct: 234 HRAKEIVPKRILQMEEAIKNRDFASFSQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 293

Query: 123 CIEKWNCCEGTPQVG 137
             EKWN  E  PQV 
Sbjct: 294 IAEKWNRSEEAPQVA 308


>Glyma10g42630.2 
          Length = 388

 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 90/135 (66%), Gaps = 32/135 (23%)

Query: 3   FCEWNMGKVEDGSDSRAVQVVDDKHWDDLVIIIAVVSSRQKETSSTTGMRETVETSLLLQ 62
           F +W MGK ++GSDS AVQ+ D+KHWDDLVI+IAVVSSRQKETSST+GM E+VETSLLLQ
Sbjct: 174 FVKWIMGKEDNGSDSLAVQLADEKHWDDLVIVIAVVSSRQKETSSTSGMCESVETSLLLQ 233

Query: 63  HRAKEVVPKRIIKMEEAIKNRDFASFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 122
           HRAK                                FHAVCLDTSPPIFYMNDTSHRIIS
Sbjct: 234 HRAK--------------------------------FHAVCLDTSPPIFYMNDTSHRIIS 261

Query: 123 CIEKWNCCEGTPQVG 137
             EKWN  E  PQV 
Sbjct: 262 IAEKWNRSEEAPQVA 276