Jatropha Genome Database

JcCB0172651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0172651.10 + phase: 2 /partial
         (172 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g23360.1                                                       133   9e-32

>Glyma16g23360.1 
          Length = 604

 Score =  133 bits (335), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 102/182 (56%), Gaps = 19/182 (10%)

Query: 2   PIADFLHENVLDFISDEAMDAAKDVAXXXXXXXXXXXXFRGILARYNEXXXXXXXXXXXX 61
           P+ADFLHENVLDF++DEA+D A  ++             RG+L+ YNE            
Sbjct: 431 PVADFLHENVLDFLNDEAIDDAWTLSSYLGDADILLTKLRGMLSTYNEAESVLRSAAASI 490

Query: 62  XXRGVLFGNSHPSPSRWHAIRRPKLWQVEQSLLLNQKETISQRLTVYGGSSFSN--MSDV 119
             RGVLFGNSHP  SRWHAIRRPKLWQVE++ L   +     RL +     FS+  MS +
Sbjct: 491 AVRGVLFGNSHPLSSRWHAIRRPKLWQVEKASLYKNE---VDRLRIPACRRFSSYHMSIM 547

Query: 120 AAEYLPALKSLGDGASGFEAHKVHHKGT---------WDDSSERMSLDDEEGQISDDEIE 170
             EY+P LK LG+GA G      HH+ +          D   ++M LD +  +ISDD+IE
Sbjct: 548 TTEYMPMLKLLGNGAWGG-----HHEPSPESLLNLEMEDFDFDKMDLDGQSREISDDDIE 602

Query: 171 DW 172
           DW
Sbjct: 603 DW 604