Jatropha Genome Database

JcCB0172401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0172401.10 - phase: 2 /pseudo/partial
         (166 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g04070.1                                                       195   1e-50
Glyma04g03940.1                                                       194   3e-50

>Glyma06g04070.1 
          Length = 297

 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/151 (67%), Positives = 113/151 (74%), Gaps = 2/151 (1%)

Query: 1   AAGSPNVNIGVVGAGTASIFNEVMQSSGQVLDISFTPSKATGKVLASELPKSENKTCTVL 60
           A+G P+V IGVVGAGTASIF E +QSS + LDI+F PSKATGKVLA+ELPK  +K CTVL
Sbjct: 124 ASGMPHVKIGVVGAGTASIFKEALQSSNRSLDIAFVPSKATGKVLATELPKIGSK-CTVL 182

Query: 61  YPASAKASNEIEEGLSNRGFEVVRLNTYTTVPVDHVDQMVLKQXXXXXXXXXXXXXXXXX 120
           YPASAKASNEIEEGLSNRGFEV R+NTYTTVPV HVD  VLK                  
Sbjct: 183 YPASAKASNEIEEGLSNRGFEVTRMNTYTTVPVQHVDHTVLKIALAAPVVTVASPSSIRA 242

Query: 121 XXNLISESEQWNNSVACIGETTASAARRLGL 151
             NL+S+SE WNNSVACIGETTA+ AR LG 
Sbjct: 243 WKNLLSDSE-WNNSVACIGETTATMARSLGF 272


>Glyma04g03940.1 
          Length = 340

 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/151 (66%), Positives = 113/151 (74%), Gaps = 2/151 (1%)

Query: 1   AAGSPNVNIGVVGAGTASIFNEVMQSSGQVLDISFTPSKATGKVLASELPKSENKTCTVL 60
           ++G P+V IGVVGAGTASIF E +QSS + +DI+F PSKATGKVLA+ELPK  NK CTVL
Sbjct: 132 SSGMPHVKIGVVGAGTASIFKEALQSSNRSIDIAFVPSKATGKVLATELPKIGNK-CTVL 190

Query: 61  YPASAKASNEIEEGLSNRGFEVVRLNTYTTVPVDHVDQMVLKQXXXXXXXXXXXXXXXXX 120
           YPASAKASNEIEEGLSNRGFEV R+NTYTTVPV HVD  VLK                  
Sbjct: 191 YPASAKASNEIEEGLSNRGFEVTRMNTYTTVPVQHVDHTVLKIALAAPVVTVASPSSIRA 250

Query: 121 XXNLISESEQWNNSVACIGETTASAARRLGL 151
             NL+S+SE WNNSVACIGETTA+ AR LG 
Sbjct: 251 WKNLLSDSE-WNNSVACIGETTATMARSLGF 280