Jatropha Genome Database

JcCB0171801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171801.10 - phase: 0 
         (142 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g32970.1                                                       117   3e-27
Glyma03g30100.1                                                       117   3e-27
Glyma09g17100.1                                                        56   1e-08

>Glyma19g32970.1 
          Length = 128

 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 92/143 (64%), Gaps = 18/143 (12%)

Query: 1   MDSASTNSTTTVQHVTKKSSDELLRKFAEVEDDNDEAXXXXXXXXXXXXXXXQARKEVAC 60
           MD+A   +   VQHVT+KSSDELLRKFAE    ++EA               +   E  C
Sbjct: 1   MDTA-IATEAKVQHVTRKSSDELLRKFAEA--GSNEAGKNKRRKKK------KRESECDC 51

Query: 61  ESPSHYSNSLVEKRSLLPP-VTRKSVLLRQLGIGRSQLRARDFKNKS-VFVAIEKTWRKT 118
           +SP +   ++VE+RSLLPP VTR+SVLLRQL       R RD +NKS +F  I KTWR T
Sbjct: 52  DSPMNGGAAVVERRSLLPPKVTRRSVLLRQL-------RVRDVRNKSSLFGTIHKTWRIT 104

Query: 119 LEGASRVLLEKHYNRHRRLISDV 141
           +E ASRV LEKHY+RH+RLI+D+
Sbjct: 105 VESASRVFLEKHYHRHKRLINDI 127


>Glyma03g30100.1 
          Length = 136

 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 86/141 (60%), Gaps = 16/141 (11%)

Query: 4   ASTNSTTTVQHVTKKSSDELLRKFAEVEDDNDEAXXXXXXXXXXXXXXXQARKEVACESP 63
           A+      VQHVTKKSSDELLRKFAE   D                   +      C+SP
Sbjct: 8   ATAAEANKVQHVTKKSSDELLRKFAEAGSDEAAGENKRRKKKKRESELCE------CDSP 61

Query: 64  SHYSNS-LVEKRSLL-PPVTRKSVLLRQLGIGRSQLRARDFKNKS-VFVAIEKTWRKTLE 120
           S    + +VE+RSLL P VTR+SVLLRQL       R RD +NKS +F  I KTWR+T+E
Sbjct: 62  SSNGGAAMVERRSLLLPKVTRRSVLLRQL-------RVRDVRNKSSLFGTIHKTWRRTVE 114

Query: 121 GASRVLLEKHYNRHRRLISDV 141
           GASRV LEKHY+RH+RLI+D+
Sbjct: 115 GASRVFLEKHYHRHKRLINDI 135


>Glyma09g17100.1 
          Length = 86

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 53/109 (48%), Gaps = 34/109 (31%)

Query: 8   STTTVQHVTKKSSDELLRKFAEVEDDNDEAXXXXXXXXXXXXXXXQARKEVACESPSHYS 67
           +TT VQHVTKKSSDELLRKFAEV D N+                   +K+    +     
Sbjct: 4   ATTGVQHVTKKSSDELLRKFAEVGDSNNAPK----------------KKKTKRTAEDGSG 47

Query: 68  NSLVEKRSLLPPVTRKSVLLRQLGIGRSQLRARD---FKNKSVFVAIEK 113
            ++VE+RSLL                R+ LRARD   F+ KS+   IEK
Sbjct: 48  TAVVERRSLLL---------------RAHLRARDLTHFRTKSLLGTIEK 81