Jatropha Genome Database

JcCB0171281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171281.10 + phase: 0 /pseudo/partial
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g02320.1                                                       111   1e-25
Glyma04g02260.1                                                       110   4e-25
Glyma10g43000.1                                                        98   2e-21
Glyma20g23980.1                                                        96   8e-21
Glyma10g34820.1                                                        57   5e-09

>Glyma06g02320.1 
          Length = 387

 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 63/69 (91%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGKAQGCISGI S A++VSPL+FSPLTALFLSERAPF FPGFSIMC GF SMI+L+QS+M
Sbjct: 319 QGKAQGCISGICSIAHIVSPLVFSPLTALFLSERAPFDFPGFSIMCIGFASMISLVQSMM 378

Query: 90  MRLPPPLIS 98
           +R+ PP+++
Sbjct: 379 LRVVPPILN 387


>Glyma04g02260.1 
          Length = 430

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 62/69 (89%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGKAQGCISGI S A++VSPL+FSPLTALFLSE+APF FPGFSIMC GF SMI+ +QS+M
Sbjct: 362 QGKAQGCISGICSIAHIVSPLVFSPLTALFLSEKAPFDFPGFSIMCIGFASMISFVQSLM 421

Query: 90  MRLPPPLIS 98
           +R+ PP+++
Sbjct: 422 LRVAPPILN 430


>Glyma10g43000.1 
          Length = 443

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 56/75 (74%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QG  QGC+S I SFAN+++PL+FSPLTALFLSE APF+FPGFS+MC G   M+A  QS+M
Sbjct: 362 QGMVQGCLSAISSFANIIAPLIFSPLTALFLSEEAPFYFPGFSLMCLGLALMVAFFQSLM 421

Query: 90  MRLPPPLISNERVNN 104
           +R  PP+   +   N
Sbjct: 422 IRAVPPIAGGKISGN 436


>Glyma20g23980.1 
          Length = 443

 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 57/75 (76%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QG  QGC+S I SFAN+++PL+FSPLTALFLSE APF+FPGFS+MC G   M+A  QS++
Sbjct: 362 QGMVQGCLSAISSFANIIAPLIFSPLTALFLSEEAPFYFPGFSLMCLGLALMVAFFQSLI 421

Query: 90  MRLPPPLISNERVNN 104
           +R  PP+   +  +N
Sbjct: 422 IRAVPPIAGGKISSN 436


>Glyma10g34820.1 
          Length = 414

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIAL 84
           QGKAQ  I+G  S ++++SP+  SPLT+ FLS  APF   GFSI+CA    +I+L
Sbjct: 331 QGKAQTFIAGTQSISDLLSPIAMSPLTSWFLSSNAPFECKGFSIICASICMIISL 385