Jatropha Genome Database

JcCB0170441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0170441.10 + phase: 0 /partial
         (284 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g36580.1                                                       380   e-106
Glyma05g36580.2                                                       377   e-105
Glyma03g26300.1                                                        74   2e-13

>Glyma05g36580.1 
          Length = 580

 Score =  380 bits (977), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/282 (63%), Positives = 216/282 (76%)

Query: 3   TLESLSPCNNIGPVIPTTPLITFLERVQETALDTFGKKGFDPKLYVDLSLKFNLSTTEKA 62
           TL +++  + +  V P+TPL++FLER+QETA +TF    FDPK YVD+ LK  L+ TE A
Sbjct: 19  TLVTVTASHCVMAVTPSTPLLSFLERLQETAFETFAHSNFDPKTYVDMPLKSALTVTEDA 78

Query: 63  FDGLPRNENGNVLVKDLEEFIATYFEDEGDDLVYYDPPDFVPEPDGFLPEVENLEVREWA 122
           F  LPRN NG+V V+DL+ FI  YFE  GDDLVY DP DFVPEP+GFLP+V   +VR WA
Sbjct: 79  FQKLPRNANGSVPVEDLKRFIEAYFEGAGDDLVYRDPQDFVPEPEGFLPKVNQPQVRAWA 138

Query: 123 LKVHSLWKNLSRKISGEVLKQXXXXXXXXXXXXMIVPGSRFREVYYWDSYWVIRGLLASK 182
           L+VHSLWKNLSRKISG V  Q            +++PGSRFREVYYWDSYWVIRGLLASK
Sbjct: 139 LQVHSLWKNLSRKISGAVKAQPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLLASK 198

Query: 183 MYETAKSIVTNLISLVNKYGFALNGGRAYYTNRSEPPLLSAMVYEIYNRTGDMEXXXXXX 242
           M++TAK+IVTNLISL++KYGF LNG RAYYTNRS+PPLLSAM+YEIYN TGD+E      
Sbjct: 199 MHDTAKAIVTNLISLIDKYGFVLNGARAYYTNRSQPPLLSAMIYEIYNSTGDLELVKRSL 258

Query: 243 XXXXXEHEFWNSEMHKVTIQDAQGSNHILSRYYAKWNKPRPE 284
                E+EFWNS++HK+TI DAQG  H L+RYYAKW+KPRPE
Sbjct: 259 PALLKEYEFWNSDIHKLTILDAQGCTHTLNRYYAKWDKPRPE 300


>Glyma05g36580.2 
          Length = 557

 Score =  377 bits (968), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/272 (65%), Positives = 210/272 (77%)

Query: 13  IGPVIPTTPLITFLERVQETALDTFGKKGFDPKLYVDLSLKFNLSTTEKAFDGLPRNENG 72
           +  V P+TPL++FLER+QETA +TF    FDPK YVD+ LK  L+ TE AF  LPRN NG
Sbjct: 6   VMAVTPSTPLLSFLERLQETAFETFAHSNFDPKTYVDMPLKSALTVTEDAFQKLPRNANG 65

Query: 73  NVLVKDLEEFIATYFEDEGDDLVYYDPPDFVPEPDGFLPEVENLEVREWALKVHSLWKNL 132
           +V V+DL+ FI  YFE  GDDLVY DP DFVPEP+GFLP+V   +VR WAL+VHSLWKNL
Sbjct: 66  SVPVEDLKRFIEAYFEGAGDDLVYRDPQDFVPEPEGFLPKVNQPQVRAWALQVHSLWKNL 125

Query: 133 SRKISGEVLKQXXXXXXXXXXXXMIVPGSRFREVYYWDSYWVIRGLLASKMYETAKSIVT 192
           SRKISG V  Q            +++PGSRFREVYYWDSYWVIRGLLASKM++TAK+IVT
Sbjct: 126 SRKISGAVKAQPDLHTLLPLPGSVVIPGSRFREVYYWDSYWVIRGLLASKMHDTAKAIVT 185

Query: 193 NLISLVNKYGFALNGGRAYYTNRSEPPLLSAMVYEIYNRTGDMEXXXXXXXXXXXEHEFW 252
           NLISL++KYGF LNG RAYYTNRS+PPLLSAM+YEIYN TGD+E           E+EFW
Sbjct: 186 NLISLIDKYGFVLNGARAYYTNRSQPPLLSAMIYEIYNSTGDLELVKRSLPALLKEYEFW 245

Query: 253 NSEMHKVTIQDAQGSNHILSRYYAKWNKPRPE 284
           NS++HK+TI DAQG  H L+RYYAKW+KPRPE
Sbjct: 246 NSDIHKLTILDAQGCTHTLNRYYAKWDKPRPE 277


>Glyma03g26300.1 
          Length = 42

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 37/41 (90%)

Query: 175 IRGLLASKMYETAKSIVTNLISLVNKYGFALNGGRAYYTNR 215
           +RGLLASKM++T K+IVTNLISL+ KYGF LNG RAYYTNR
Sbjct: 1   VRGLLASKMHDTTKAIVTNLISLIEKYGFVLNGARAYYTNR 41