Jatropha Genome Database

JcCB0170011.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0170011.20 - phase: 1 /partial
         (51 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g42310.2                                                        58   2e-09
Glyma18g42300.1                                                        58   2e-09
Glyma18g42280.1                                                        58   2e-09
Glyma18g42310.1                                                        57   6e-09

>Glyma18g42310.2 
          Length = 683

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 27/41 (65%)

Query: 11  SPEACAAILWXXXXXXXXXXXXXXITATELCKLQIADGVIP 51
           SPEACAAILW              ITATELCKLQIADGVIP
Sbjct: 311 SPEACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIP 351


>Glyma18g42300.1 
          Length = 690

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 27/41 (65%)

Query: 11  SPEACAAILWXXXXXXXXXXXXXXITATELCKLQIADGVIP 51
           SPEACAAILW              ITATELCKLQIADGVIP
Sbjct: 311 SPEACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIP 351


>Glyma18g42280.1 
          Length = 709

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 27/41 (65%)

Query: 11  SPEACAAILWXXXXXXXXXXXXXXITATELCKLQIADGVIP 51
           SPEACAAILW              ITATELCKLQIADGVIP
Sbjct: 311 SPEACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIP 351


>Glyma18g42310.1 
          Length = 893

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 8   SSYS-PEACAAILWXXXXXXXXXXXXXXITATELCKLQIADGVIP 51
           S+Y  PEACAAILW              ITATELCKLQIADGVIP
Sbjct: 533 SAYKVPEACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIP 577