Jatropha Genome Database

JcCB0164521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0164521.10 - phase: 0 /partial
         (141 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g35850.1                                                        52   2e-07
Glyma09g34380.1                                                        52   2e-07
Glyma01g01400.1                                                        52   2e-07

>Glyma15g35850.1 
          Length = 1314

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGEVMEDIASN 115
           L T R +Y +LP +LK C  YC I  + +  E+ ++V L +AEGL+ +K  + MED+   
Sbjct: 382 LQTLRLSYNQLPSYLKRCFAYCSILPKGFEFEEKEIVLLWMAEGLLEQKSQKQMEDVGHE 441

Query: 116 VIAELIDLGMLRQ 128
              EL+   + ++
Sbjct: 442 YFQELLSASLFQK 454


>Glyma09g34380.1 
          Length = 901

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 63  NYEKLPDFLKCCIDYCCICVRYH-IEKGKLVRLLLAEGLITEKPGEVMEDIASNVIAELI 121
           ++ +LP +LK C+ Y  I   +H IE  +L+RL +AEG +  + G+ +E++A + + EL+
Sbjct: 405 SFNELPYYLKSCLLYLSIFPEFHAIEHMRLIRLWIAEGFVNGEEGKTLEEVADSYLKELL 464

Query: 122 DLGMLRQV 129
           D  +L+ V
Sbjct: 465 DRSLLQVV 472


>Glyma01g01400.1 
          Length = 938

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 63  NYEKLPDFLKCCIDYCCICVRYH-IEKGKLVRLLLAEGLITEKPGEVMEDIASNVIAELI 121
           ++ +LP +LK C+ Y  I   +H IE  +L+RL +AEG +  + G+ +E++A + + EL+
Sbjct: 403 SFNELPYYLKSCLLYLSIFPEFHAIEHMRLIRLWIAEGFVNGEDGKTLEEVADSYLKELL 462

Query: 122 DLGMLRQV 129
           D  +L+ V
Sbjct: 463 DRSLLQVV 470