Jatropha Genome Database

JcCB0162471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0162471.10 + phase: 1 /pseudo/partial
         (125 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g23140.1                                                        65   1e-11
Glyma01g36770.1                                                        60   4e-10
Glyma02g05060.1                                                        60   7e-10
Glyma11g08530.1                                                        57   4e-09
Glyma02g05050.1                                                        51   2e-07
Glyma16g23120.1                                                        50   5e-07

>Glyma16g23140.1 
          Length = 516

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/93 (44%), Positives = 50/93 (53%), Gaps = 12/93 (12%)

Query: 34  MTGYLIVFNRERNVLGWKPSNCYDALNTNTFPIN--PLSPAVPPATAVNPEXXXXXXXXX 91
           MTGY IVF+R+   LGWK +NC D + +NT PIN    SPAV PA AVNP          
Sbjct: 433 MTGYKIVFDRDNMNLGWKETNCSDDVLSNTSPINTPSHSPAVSPAIAVNP---------V 483

Query: 92  XXXXXXXPPANHSPRLKRFTFTIIMVLIPFFII 124
                   P N S  +K  TFT ++VL+P   I
Sbjct: 484 ARSNPSINPPNRSFMIKP-TFTFVVVLLPLIAI 515


>Glyma01g36770.1 
          Length = 508

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 2/50 (4%)

Query: 34  MTGYLIVFNRERNVLGWKPSNCYDALNTNTFPIN-PLSPAVPPATAVNPE 82
           MTGY IVF+RE  +LGW+ SNCYD    +T PIN   +PA+ PA AVNPE
Sbjct: 424 MTGYRIVFDRENMILGWRESNCYDD-ELSTLPINRSNTPAISPAIAVNPE 472


>Glyma02g05060.1 
          Length = 515

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 50/93 (53%), Gaps = 12/93 (12%)

Query: 34  MTGYLIVFNRERNVLGWKPSNCYDALNTNTFPIN--PLSPAVPPATAVNPEXXXXXXXXX 91
           M GY IVF+R+   LGWK +NC D + +NT PIN    SPAV PA AVNP          
Sbjct: 432 MIGYKIVFDRDNMNLGWKETNCSDDVLSNTSPINTPSPSPAVSPAIAVNP---------V 482

Query: 92  XXXXXXXPPANHSPRLKRFTFTIIMVLIPFFII 124
                   P N S R+K  TFT ++VL+P   I
Sbjct: 483 ATSNPSINPPNRSFRIKP-TFTFVVVLLPLIAI 514


>Glyma11g08530.1 
          Length = 508

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 36/51 (70%), Gaps = 4/51 (7%)

Query: 34  MTGYLIVFNRERNVLGWKPSNCY-DALNTNTFPIN-PLSPAVPPATAVNPE 82
           MTGY IVF+RE  +LGW+ SNCY D L  +T  IN   SPA+ PA AVNPE
Sbjct: 424 MTGYRIVFDRENMILGWRESNCYVDEL--STLAINRSNSPAISPAIAVNPE 472


>Glyma02g05050.1 
          Length = 520

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 16  LTYIVXVLSKVEMXISSD--MTGYLIVFNRERNVLGWKPSNCYDALNTN-TFPINPLSPA 72
           L Y + V+   E+ I     MTGY +VF+RE+ VLGWK  +CYD  + N   P  P S A
Sbjct: 404 LVYCLAVVKSAELNIIGQNFMTGYRVVFDREKLVLGWKKFDCYDIEDHNDAIPTRPRSHA 463

Query: 73  -VPPATA 78
            VPPA A
Sbjct: 464 DVPPAVA 470


>Glyma16g23120.1 
          Length = 519

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 16  LTYIVXVLSKVEMXISSD--MTGYLIVFNRERNVLGWKPSNCYDALNTN-TFPINPLSPA 72
           L Y + V+   E+ I     MTGY +VF+RE+ VLGWK  +CYD  + N   P  P S A
Sbjct: 403 LVYCLAVVKTAELNIIGQNFMTGYRVVFDREKLVLGWKKFDCYDIEDHNDAIPTRPHSHA 462

Query: 73  -VPPATAVN----PEXXXXXXXXXXXXXXXXPPANHSPRLKRFTFTIIMVLIPFFII 124
            VPPA A      P                  P++H       TF   +VL   +I+
Sbjct: 463 DVPPAVAAGLGNYPATDPTRKSKYNSQRSIASPSSHYSHTSLPTFLGFLVLCFVYIL 519