Jatropha Genome Database

JcCB0161221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0161221.20 + phase: 0 
         (122 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g10300.1                                                        69   1e-12
Glyma08g43280.1                                                        63   8e-11
Glyma08g43280.2                                                        51   3e-07

>Glyma18g10300.1 
          Length = 104

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 62/115 (53%), Gaps = 13/115 (11%)

Query: 1   MSGRSFL-FCNLSRPSILVRPWTPYFLYNPIKRNKGSSAEKENEGLAIDQERASSTADEF 59
           M+G  FL   N S  S LV+P  P  LYNPIK    +S  K +    + +ERA STA+EF
Sbjct: 1   MAGAQFLNLFNSSSRSSLVKPSRP-LLYNPIKDYGQASKGKHSR---LMEERAPSTAEEF 56

Query: 60  XXXXXXXXXXXXXXXXXXDQGITSQTGEKTIDGAEEAS-GDSNIESVKNRYKKHE 113
                              +G+ SQ+  K IDGAEEAS G S +ESVKNRYK HE
Sbjct: 57  ERVAEEKAKEA-------QKGVASQSLGKAIDGAEEASIGKSKVESVKNRYKGHE 104


>Glyma08g43280.1 
          Length = 105

 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 56/97 (57%), Gaps = 11/97 (11%)

Query: 18  VRPWTPYFLYNPIKRNKGSSAEKENEGLAIDQERASSTADEFXXXXXXXXXXXXXXXXXX 77
           V+P  P  LYNPIK N G +++ ++  L   +ERA STA+EF                  
Sbjct: 19  VKPSRP-LLYNPIK-NYGQASKGKHSRLM--EERAPSTAEEFERVAEEKKAKEA------ 68

Query: 78  DQGITSQTGEKTIDGAEEAS-GDSNIESVKNRYKKHE 113
            +G+ SQ+  K IDGAEEAS G S +ESVKNRYK HE
Sbjct: 69  QKGVASQSIGKAIDGAEEASLGKSKVESVKNRYKGHE 105


>Glyma08g43280.2 
          Length = 86

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 47  IDQERASSTADEFXXXXXXXXXXXXXXXXXXDQGITSQTGEKTIDGAEEAS-GDSNIESV 105
           + +ERA STA+EF                   +G+ SQ+  K IDGAEEAS G S +ESV
Sbjct: 25  LMEERAPSTAEEFERVAEEKKAKEA------QKGVASQSIGKAIDGAEEASLGKSKVESV 78

Query: 106 KNRYKKHE 113
           KNRYK HE
Sbjct: 79  KNRYKGHE 86