Jatropha Genome Database

JcCB0158591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0158591.10 + phase: 2 /partial
         (82 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g08840.1                                                       108   2e-24
Glyma04g32070.1                                                       108   2e-24
Glyma05g00200.1                                                        82   2e-16
Glyma02g13370.1                                                        58   2e-09

>Glyma17g08840.1 
          Length = 480

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 64/80 (80%)

Query: 3   EGSHLGSILIPDGSDAINFDVTDGIYQGSDFMNAKGSLSCEDGTTVDLLQLSSQLQRVEH 62
           +GSHL  +LI   +D INFD+ DGI+QGSD++N K  LS EDG T+DLLQLSSQLQRVEH
Sbjct: 401 DGSHLSPVLISGNNDIINFDMADGIFQGSDYLNVKDRLSDEDGATIDLLQLSSQLQRVEH 460

Query: 63  QKQSMQVKQENDALCWPHIT 82
           ++QS+QVKQEND+ C   IT
Sbjct: 461 ERQSLQVKQENDSSCTLRIT 480


>Glyma04g32070.1 
          Length = 121

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 64/81 (79%)

Query: 2   CEGSHLGSILIPDGSDAINFDVTDGIYQGSDFMNAKGSLSCEDGTTVDLLQLSSQLQRVE 61
            +GSHL  ILI D ++ INF++ +GI+QGSDF+N K  LSCED  T+DLLQLSSQLQRVE
Sbjct: 41  VDGSHLSPILISDNNEIINFEMANGIFQGSDFVNVKDRLSCEDSLTIDLLQLSSQLQRVE 100

Query: 62  HQKQSMQVKQENDALCWPHIT 82
           +Q+ S+QVKQEND+ C   IT
Sbjct: 101 NQRLSLQVKQENDSSCSLRIT 121


>Glyma05g00200.1 
          Length = 483

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 48/58 (82%)

Query: 25  DGIYQGSDFMNAKGSLSCEDGTTVDLLQLSSQLQRVEHQKQSMQVKQENDALCWPHIT 82
           +GI+Q SD++N K  LS EDG T+DLLQLSSQLQRVEH++QS+QVKQEND+ C   IT
Sbjct: 426 NGIFQASDYLNVKDHLSGEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT 483


>Glyma02g13370.1 
          Length = 512

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 25  DGIYQGSDFMNAKGSLSCEDGTTVDLLQLSSQLQRVEHQKQSMQVKQENDALCWPHI 81
           D I Q S+  + K SLS E   TVDL QLSS LQRVE Q+ S+ VK EN+  C+P +
Sbjct: 456 DDICQPSELFSIKHSLSSEHAATVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTV 512