Jatropha Genome Database

JcCB0155101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155101.20 + phase: 0 /partial
         (93 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g02990.1                                                       160   2e-40
Glyma05g02990.2                                                       160   3e-40
Glyma17g13650.1                                                       159   7e-40

>Glyma05g02990.1 
          Length = 488

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 83/93 (89%), Gaps = 2/93 (2%)

Query: 1  MPPP--VDFKDIQDKLSFHFRPWQRSFQFWVRAVDVYTGYKVFQLRVSLVKDVQKQEAMW 58
          M PP  VD   I+DKL++ FRPWQRSFQFWVRA+D+YTGYKVFQ+RV+ VKD QKQEAMW
Sbjct: 1  MLPPFAVDINGIKDKLTYQFRPWQRSFQFWVRAIDIYTGYKVFQVRVNFVKDAQKQEAMW 60

Query: 59 ERQHELAADKIYAMCSDLGGFFLKIAQIIGKPD 91
          E+QHELAADKI+AMC DLGGFFLKIAQIIGKPD
Sbjct: 61 EKQHELAADKIFAMCYDLGGFFLKIAQIIGKPD 93


>Glyma05g02990.2 
          Length = 438

 Score =  160 bits (405), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 83/93 (89%), Gaps = 2/93 (2%)

Query: 1  MPPP--VDFKDIQDKLSFHFRPWQRSFQFWVRAVDVYTGYKVFQLRVSLVKDVQKQEAMW 58
          M PP  VD   I+DKL++ FRPWQRSFQFWVRA+D+YTGYKVFQ+RV+ VKD QKQEAMW
Sbjct: 1  MLPPFAVDINGIKDKLTYQFRPWQRSFQFWVRAIDIYTGYKVFQVRVNFVKDAQKQEAMW 60

Query: 59 ERQHELAADKIYAMCSDLGGFFLKIAQIIGKPD 91
          E+QHELAADKI+AMC DLGGFFLKIAQIIGKPD
Sbjct: 61 EKQHELAADKIFAMCYDLGGFFLKIAQIIGKPD 93


>Glyma17g13650.1 
          Length = 483

 Score =  159 bits (402), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 82/93 (88%), Gaps = 2/93 (2%)

Query: 1  MPPPV--DFKDIQDKLSFHFRPWQRSFQFWVRAVDVYTGYKVFQLRVSLVKDVQKQEAMW 58
          M PP+  D   I+DKLS  FRPWQRSFQFWVRA+D+YTGYKVFQ+RV+ VKD QKQEAMW
Sbjct: 1  MLPPIAFDINGIKDKLSNQFRPWQRSFQFWVRAIDIYTGYKVFQVRVNFVKDAQKQEAMW 60

Query: 59 ERQHELAADKIYAMCSDLGGFFLKIAQIIGKPD 91
          ERQHELAADKI++MC DLGGFFLKIAQIIGKPD
Sbjct: 61 ERQHELAADKIFSMCYDLGGFFLKIAQIIGKPD 93