Jatropha Genome Database

JcCB0152261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0152261.10 - phase: 0 /partial
         (174 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g27630.1                                                       140   5e-34
Glyma19g27630.2                                                       140   6e-34
Glyma16g05310.1                                                       117   6e-27

>Glyma19g27630.1 
          Length = 223

 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 96/146 (65%), Gaps = 11/146 (7%)

Query: 31  SAHSMPGLSSIGRSFC--DDSPKFSMDDFEALGXXXXXXXXXXXXXXXXVVGERLLFSNV 88
           +A+S+P   S+   F   +D P FSMDDFEALG                + GER  FSNV
Sbjct: 87  AAYSLP--ISLSHQFTSRNDPPTFSMDDFEALGNSTISSSPP-------LAGERKSFSNV 137

Query: 89  TRLGFAAGHGSPALRTEETSALHNNKVTNDSSSVSGTKNSGTPSFANVISRVKSGEALDA 148
           TRLGFAA H SP+L+ +ETS LHNN  T DSS  +G +N  T S++N  SR +S  + +A
Sbjct: 138 TRLGFAAAHDSPSLQIQETSGLHNNNTTADSSVTTGLRNGETQSYSNATSRTESNISSNA 197

Query: 149 PKTNEIGKKGKKSSRVLLSTAGGRRY 174
           PKTNE+GKKGKK +RVLLSTAGGRRY
Sbjct: 198 PKTNELGKKGKKPNRVLLSTAGGRRY 223


>Glyma19g27630.2 
          Length = 194

 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 96/146 (65%), Gaps = 11/146 (7%)

Query: 31  SAHSMPGLSSIGRSFC--DDSPKFSMDDFEALGXXXXXXXXXXXXXXXXVVGERLLFSNV 88
           +A+S+P   S+   F   +D P FSMDDFEALG                + GER  FSNV
Sbjct: 58  AAYSLP--ISLSHQFTSRNDPPTFSMDDFEALGNSTISSSPP-------LAGERKSFSNV 108

Query: 89  TRLGFAAGHGSPALRTEETSALHNNKVTNDSSSVSGTKNSGTPSFANVISRVKSGEALDA 148
           TRLGFAA H SP+L+ +ETS LHNN  T DSS  +G +N  T S++N  SR +S  + +A
Sbjct: 109 TRLGFAAAHDSPSLQIQETSGLHNNNTTADSSVTTGLRNGETQSYSNATSRTESNISSNA 168

Query: 149 PKTNEIGKKGKKSSRVLLSTAGGRRY 174
           PKTNE+GKKGKK +RVLLSTAGGRRY
Sbjct: 169 PKTNELGKKGKKPNRVLLSTAGGRRY 194


>Glyma16g05310.1 
          Length = 663

 Score =  117 bits (293), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 70/145 (48%), Positives = 89/145 (61%), Gaps = 10/145 (6%)

Query: 31  SAHSMPGLSSIGRSFCDDSPKFSMDDFEALGXXXXXXXXXXXXXXXXVVGERLLFSNVTR 90
           +A+S+P   S   +  DD P FSMDDFE                   + GER  FSNVTR
Sbjct: 528 AAYSLPISLSHQFTSRDDPPTFSMDDFEG---------NSTISSSPPLAGERKSFSNVTR 578

Query: 91  LGFAAGHGSPALRTEETSALHNNKVTNDSSSVSGTKNSGTP-SFANVISRVKSGEALDAP 149
           LGFAA H SP+L+ +ETS LHNN  T+DSS  +G  ++     F+  +   +S  + +AP
Sbjct: 579 LGFAAAHDSPSLQIQETSGLHNNNRTSDSSVSTGASSAQKCFMFSTTVILAESNISSNAP 638

Query: 150 KTNEIGKKGKKSSRVLLSTAGGRRY 174
           KTNE+GKKGKK +RVLLSTAGGRRY
Sbjct: 639 KTNELGKKGKKPNRVLLSTAGGRRY 663