Jatropha Genome Database

JcCB0151651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0151651.10 + phase: 1 /pseudo/partial
         (168 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g03250.1                                                        68   4e-12
Glyma11g11050.1                                                        61   5e-10
Glyma09g41780.2                                                        55   3e-08
Glyma09g41780.1                                                        55   3e-08
Glyma20g00720.1                                                        54   9e-08

>Glyma12g03250.1 
          Length = 205

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 25  RAIAHEIMTQRNHTQRTCGNAVVVDVDSGRTTRLTYXXXXXXXXXXXXHAVINCEHYVNL 84
           RA A      R   +RT     +VDVD    TR               + +INC+ Y+NL
Sbjct: 77  RAFAEAKNNSRRVRRRT-----IVDVDLEDQTRRNKRRRELP------NLIINCDKYINL 125

Query: 85  ESSGSSMRDNAQQLQXXXXXKEPTFNCPICMGPFVEETSTKCGHIF 130
           E   SSM  + ++       KE  FNCPICMGP V E ST+CGHIF
Sbjct: 126 EGGSSSMEQSFKK--PPEPPKELVFNCPICMGPMVHEMSTRCGHIF 169


>Glyma11g11050.1 
          Length = 205

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 53/106 (50%), Gaps = 13/106 (12%)

Query: 25  RAIAHEIMTQRNHTQRTCGNAVVVDVDSGRTTRLTYXXXXXXXXXXXXHAVINCEHYVNL 84
           RA A      R   +RT     VVD+D    TR               + +INC+ Y+NL
Sbjct: 77  RAFAEAKNNSRRIRRRT-----VVDIDLEDQTRRNKRRRELP------NLIINCDKYINL 125

Query: 85  ESSGSSMRDNAQQLQXXXXXKEPTFNCPICMGPFVEETSTKCGHIF 130
           E S SSM  + ++       KE  FNCPICMGP V E ST+CGHIF
Sbjct: 126 EGSSSSMGGSVKK--TPEPPKELVFNCPICMGPMVHEMSTRCGHIF 169


>Glyma09g41780.2 
          Length = 206

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 73  HAVINCEHYVNLESSGSSMRDNAQQLQXXXXXKEP----TFNCPICMGPFVEETSTKCGH 128
             +IN + YVNL ++ SS  +NA++        E      FNCPICM P VEE ST+CGH
Sbjct: 109 QTIINGDLYVNLANNSSSASENAKKTPEPPKEPEAPKEPVFNCPICMSPLVEEMSTRCGH 168

Query: 129 IF 130
           IF
Sbjct: 169 IF 170


>Glyma09g41780.1 
          Length = 206

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 73  HAVINCEHYVNLESSGSSMRDNAQQLQXXXXXKEP----TFNCPICMGPFVEETSTKCGH 128
             +IN + YVNL ++ SS  +NA++        E      FNCPICM P VEE ST+CGH
Sbjct: 109 QTIINGDLYVNLANNSSSASENAKKTPEPPKEPEAPKEPVFNCPICMSPLVEEMSTRCGH 168

Query: 129 IF 130
           IF
Sbjct: 169 IF 170


>Glyma20g00720.1 
          Length = 100

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 73  HAVINCEHYVNLESSGSSMRDNAQQLQXXXXXKEPTFNCPICMGPFVEETSTKCGHIF 130
             +IN   +VNLE+S  S  +N +  +     ++P FNCPICM    EETST+C HIF
Sbjct: 10  QTIINGSLWVNLENSSCSASENNKTPEPPK--EQPVFNCPICMSALEEETSTRCAHIF 65