Jatropha Genome Database

JcCB0151131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0151131.10 + phase: 0 /partial
         (127 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g32360.1                                                       126   7e-30

>Glyma19g32360.1 
          Length = 1076

 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 83/119 (69%)

Query: 2   LMPEWSKSVQDWNSMIGPLIDKMFAEPSNATIVRFLSYISEHLAEAADVVLHRVLLQMQS 61
           L+P WSKSVQDWN +IGPL+DKMF +PSNATIV+FLSYISE+LA  AD+VLH VLL ++ 
Sbjct: 618 LVPVWSKSVQDWNLLIGPLVDKMFGDPSNATIVKFLSYISENLANVADLVLHHVLLHVKE 677

Query: 62  QKGIKKGLLSRWESKSCQNEDLMGMQQSLFEXXXXXXXXXXXXXXVFNDLNSFIMYGQL 120
           QK I +  LSRWE ++   ++   MQQSLFE               FNDLNS IMYG L
Sbjct: 678 QKKIDESFLSRWEQRTYTCDEFEEMQQSLFEHLCPLLIIKILPLKTFNDLNSSIMYGHL 736