Jatropha Genome Database

JcCB0148821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0148821.10 - phase: 0 /partial
         (182 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g24580.1                                                       180   6e-46
Glyma20g18970.1                                                       103   1e-22
Glyma20g18950.1                                                        70   1e-12

>Glyma10g24580.1 
          Length = 638

 Score =  180 bits (457), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 105/171 (61%), Positives = 117/171 (68%), Gaps = 17/171 (9%)

Query: 8   ANRQPQPRSFHNPSNRR-VAQARVPATRTSQLRSRLFNRSPAALSRARNPSLATLSTARN 66
           A RQP+ R   NPS RR +AQA   + R SQ RSR       A SR R PS  T S  R 
Sbjct: 459 AIRQPRTRFPENPSRRRAMAQASF-SNRMSQWRSR-------ATSRTRAPS--TSSRGRG 508

Query: 67  FQFPLGMDIDMRLDILEALEE----FSDMSMTTSRILQVQRDFNENDYEMLLALDENNHQ 122
            +FPL MD+DMRLDILEALE+    FSDM +T   I   +RDF + DYEMLLALDE NHQ
Sbjct: 509 PRFPLDMDLDMRLDILEALEDSVGDFSDMGITDG-IFNARRDFTDADYEMLLALDEGNHQ 567

Query: 123 R-GASVNRINSLPESTVQTDNFEETCAICLETPTVGETIRHLPCLHKFHKD 172
             GAS N INSLP+ST+QTDNF + CAICLETP  GE IRHLPCLHKFHKD
Sbjct: 568 HTGASSNLINSLPQSTIQTDNFTDACAICLETPVQGEIIRHLPCLHKFHKD 618


>Glyma20g18970.1 
          Length = 82

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 51/63 (80%), Gaps = 1/63 (1%)

Query: 112 MLLALDENNHQR-GASVNRINSLPESTVQTDNFEETCAICLETPTVGETIRHLPCLHKFH 170
           MLLALDE NHQ  GAS N INSLP+ST+ TDNF + CAICLE P  GETIRHLPCLHKFH
Sbjct: 1   MLLALDEGNHQHTGASANLINSLPQSTILTDNFTDACAICLEIPVQGETIRHLPCLHKFH 60

Query: 171 KDS 173
           KD 
Sbjct: 61  KDC 63


>Glyma20g18950.1 
          Length = 243

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 61/105 (58%), Gaps = 16/105 (15%)

Query: 8   ANRQPQPRSFHNPSNRR-VAQARVPATRTSQLRSRLFNRSPAALSRARNPSLATLSTARN 66
           ANRQ + R   NPS RR +AQA   + R SQ RSR       + SR R P+  T S  R 
Sbjct: 150 ANRQSRTRFQQNPSRRRAMAQASF-SNRMSQWRSR-------STSRTRAPN--TSSRGRG 199

Query: 67  FQFPLGMDIDMRLDILEALE----EFSDMSMTTSRILQVQRDFNE 107
            QFPL MD+DMRLDILEALE    +FSDM M    I   +RDF E
Sbjct: 200 PQFPLDMDLDMRLDILEALEDSIGDFSDMGMADD-IFNARRDFTE 243