Jatropha Genome Database

JcCB0143751.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143751.20 + phase: 0 
         (135 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g08210.1                                                       128   2e-30
Glyma09g32480.1                                                       116   6e-27
Glyma07g09300.1                                                       114   3e-26
Glyma06g15360.1                                                        89   1e-18
Glyma04g39490.1                                                        89   1e-18
Glyma06g15360.2                                                        72   1e-13

>Glyma14g08210.1 
          Length = 259

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 73/103 (70%), Gaps = 8/103 (7%)

Query: 1   MATRDMEMEGDRELLIPVAEIPENAKSKTXXXXXXXXXXXXHRLSGVEALSKVIRSWASK 60
           MA+RD+E      LLIPV+ I EN    +            H  S  EA SKVIRSWASK
Sbjct: 1   MASRDLE------LLIPVSSISENGPKSSAPSSPSVTSTQNH--SSHEAFSKVIRSWASK 52

Query: 61  KFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           KFM+GCVILLPIA+TFYVTWGF+ FVDGFFSP+YNHLGINIFG
Sbjct: 53  KFMSGCVILLPIAITFYVTWGFIRFVDGFFSPIYNHLGINIFG 95


>Glyma09g32480.1 
          Length = 265

 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 68/103 (66%), Gaps = 5/103 (4%)

Query: 1   MATRDMEMEGDRELLIPVAEIPENAKSKTXXXXXXXXXXXXHRLSGVEALSKVIRSWASK 60
           + TRD     DRELLIPVA+IP    +                 SG E   KVIRSWASK
Sbjct: 6   ITTRDR----DRELLIPVADIPA-GDAAVSPSPKPSSSASPPHHSGRETFYKVIRSWASK 60

Query: 61  KFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           KFMTGCVIL PIA+TFY+TW F+HFVDGFFSP+Y  LGI+IFG
Sbjct: 61  KFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFG 103


>Glyma07g09300.1 
          Length = 265

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 67/103 (65%), Gaps = 5/103 (4%)

Query: 1   MATRDMEMEGDRELLIPVAEIPENAKSKTXXXXXXXXXXXXHRLSGVEALSKVIRSWASK 60
           + TRD     DRELLIPVA+ P    +                 SG E   KV+RSWASK
Sbjct: 6   ITTRDR----DRELLIPVADTPA-GDAAVSPSPKPSSSASSPHHSGRETFYKVVRSWASK 60

Query: 61  KFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           KFMTGCVIL PIA+TFY+TW F+HFVDGFFSP+Y  LGI+IFG
Sbjct: 61  KFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYAQLGIDIFG 103


>Glyma06g15360.1 
          Length = 258

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 46/51 (90%)

Query: 53  VIRSWASKKFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           V++SW SKKFMTGCV+L P+AVTF++TW F+ FVDGFFSP+Y+ LGI++FG
Sbjct: 45  VLQSWVSKKFMTGCVVLFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDVFG 95


>Glyma04g39490.1 
          Length = 258

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 46/51 (90%)

Query: 53  VIRSWASKKFMTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           V++SW SKKFMTGCV+L P+AVTF++TW F+ FVDGFFSP+Y+ LGI++FG
Sbjct: 45  VLQSWVSKKFMTGCVVLFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDVFG 95


>Glyma06g15360.2 
          Length = 204

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 37/41 (90%)

Query: 63  MTGCVILLPIAVTFYVTWGFVHFVDGFFSPVYNHLGINIFG 103
           MTGCV+L P+AVTF++TW F+ FVDGFFSP+Y+ LGI++FG
Sbjct: 1   MTGCVVLFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDVFG 41