Jatropha Genome Database

JcCB0143731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143731.10 + phase: 0 /pseudo
         (271 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g54020.1                                                       129   4e-30
Glyma10g44090.1                                                       107   1e-23
Glyma07g38910.2                                                        57   2e-08
Glyma07g38910.1                                                        57   2e-08

>Glyma18g54020.1 
          Length = 206

 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 72/86 (83%)

Query: 161 HHKQEDSRSKLLTLPTILTLGRVAAVPLLVSTFYLDSWWGRTATTSIFIAAAVTDWLDGY 220
           + +  +S SK LTLPTILTLGRVAAVPLLV+TFY+D W G   TTSIF AAAVTDWLDGY
Sbjct: 1   NDRTSNSNSKFLTLPTILTLGRVAAVPLLVATFYMDGWRGTVVTTSIFTAAAVTDWLDGY 60

Query: 221 LARKMRLGSAFGAFLDPVADKVCVSS 246
           +ARKM++ S FGAFLDPVADK+ VS+
Sbjct: 61  IARKMKMKSTFGAFLDPVADKLMVSA 86


>Glyma10g44090.1 
          Length = 254

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/66 (75%), Positives = 60/66 (90%)

Query: 181 GRVAAVPLLVSTFYLDSWWGRTATTSIFIAAAVTDWLDGYLARKMRLGSAFGAFLDPVAD 240
           GRVAAVPLLV+TFY+D W G  ATTSIF+AA++TDWLDGYLARKM+L S+FGAFLDPVAD
Sbjct: 68  GRVAAVPLLVATFYMDGWRGTAATTSIFVAASITDWLDGYLARKMKLKSSFGAFLDPVAD 127

Query: 241 KVCVSS 246
           K+ V++
Sbjct: 128 KLMVAA 133


>Glyma07g38910.2 
          Length = 280

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 153 QPPPSSQNHHKQEDSRSKLLTLPTILTLGRVAAVPLLVSTFYLDSWWGRTATTSIFIAAA 212
           Q P    +H  +       + LP  ++  R+ + PLL   + + + +  +A   + ++ A
Sbjct: 92  QFPDPVPSHSNKPSIFHSFVNLPNFISFTRLLSGPLL--AWMISNEFYTSAMVGLALSGA 149

Query: 213 VTDWLDGYLARKMRLGSAFGAFLDPVADKVCV 244
            TDWLDGY+ARKM++ S  G++LDP+ADKV +
Sbjct: 150 -TDWLDGYVARKMKIDSVVGSYLDPLADKVLI 180


>Glyma07g38910.1 
          Length = 309

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 153 QPPPSSQNHHKQEDSRSKLLTLPTILTLGRVAAVPLLVSTFYLDSWWGRTATTSIFIAAA 212
           Q P    +H  +       + LP  ++  R+ + PLL   + + + +  +A   + ++ A
Sbjct: 92  QFPDPVPSHSNKPSIFHSFVNLPNFISFTRLLSGPLL--AWMISNEFYTSAMVGLALSGA 149

Query: 213 VTDWLDGYLARKMRLGSAFGAFLDPVADKVCV 244
            TDWLDGY+ARKM++ S  G++LDP+ADKV +
Sbjct: 150 -TDWLDGYVARKMKIDSVVGSYLDPLADKVLI 180