Jatropha Genome Database

JcCB0143221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143221.10 + phase: 0 /pseudo/partial
         (365 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g21060.1                                                       211   1e-54

>Glyma06g21060.1 
          Length = 764

 Score =  211 bits (537), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 150/261 (57%), Gaps = 28/261 (10%)

Query: 126 ALKNKRLTFAWLDGEAQEKYCLFYLHSETSYDTCGPRRDLSDVPRLFIVRYKRNT----- 180
           A K +RLTFAWLDGE Q+ YC FYL    S  TCG RR ++D+PRLF++RY RN+     
Sbjct: 509 AFKRRRLTFAWLDGEKQKDYCQFYLGQAASEHTCGQRRGVTDIPRLFVIRYLRNSSAVDL 568

Query: 181 -TQDNVRGKRNAFDD--EDADPASQLVARYNGSDETPQIARWIAETISDGETRDLPFFKI 237
            T++  + K     D   D+D   Q VA Y G D+  QI  W+A  ISDG++RDLPFF +
Sbjct: 569 RTEEKTKWKSLLVQDLINDSDQTGQFVAGYKGEDDVSQITHWLANIISDGDSRDLPFFTL 628

Query: 238 KAPDLVPEDSDPIWSRGAQNILYKSVGVKHWIYRIKSRIYDHMGDPRIGPILLLGALMSF 297
           + P LVP+D++PIWS  AQNI  +++  K  +  + S +  +  DPR+GP LLLGAL+S 
Sbjct: 629 RTPKLVPDDTEPIWSMSAQNIPLQNL--KQSVLGVLSGLSAYREDPRVGPFLLLGALISL 686

Query: 298 GAVWLMRSQ--------------PAHRGQSSQPSESGXXXXXXXXXXXXXXXXXXXXXXP 343
           G +WL RSQ              P+   Q SQPS                         P
Sbjct: 687 GTIWLRRSQQVQSPELNQPSFNQPSDSNQPSQPSS----MDERKQKPSDRVRRRPNKKPP 742

Query: 344 PSISDIEPKDAYQMPMSDSDS 364
           PS++D+EP DAYQMP+SDS+S
Sbjct: 743 PSMTDLEPSDAYQMPLSDSES 763