Jatropha Genome Database

JcCB0143121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0143121.10 - phase: 0 /pseudo
         (319 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g04890.1                                                       115   8e-26
Glyma13g19250.1                                                        91   2e-18
Glyma13g19250.2                                                        89   4e-18
Glyma03g32740.1                                                        86   6e-17
Glyma18g14530.1                                                        64   3e-10
Glyma02g45150.2                                                        58   1e-08
Glyma02g45150.1                                                        58   1e-08

>Glyma10g04890.1 
          Length = 433

 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 74/115 (64%), Gaps = 14/115 (12%)

Query: 11  DEDCAIPTSSTFTRPKKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLPHSKYDDAVLPV 70
           DE+  IP S      KK  T  DEIMELLWQNGQVV+Q+Q Q   +K P +   D  +P 
Sbjct: 5   DEEYPIPVS------KKPSTQNDEIMELLWQNGQVVMQNQNQRPFRKQPPTTDGDGPIPA 58

Query: 71  EASNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLND--TNFD-QDFCADLLYP 122
                REIRS++  +   QHLFMQEDEMASWLHYP+++    FD  DFCAD+LYP
Sbjct: 59  -----REIRSSEAENYNSQHLFMQEDEMASWLHYPIHEDPPPFDHHDFCADILYP 108


>Glyma13g19250.1 
          Length = 478

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 62/91 (68%), Gaps = 6/91 (6%)

Query: 36  MELLWQNGQVVVQSQTQMSLKKLPHSKYDDAVLPVEASNTREIRSTQ-EHHQQQQHLFMQ 94
           MELLWQNGQVV+QSQ Q   +K P     +A     A + REIRS++ E++   QHLFMQ
Sbjct: 1   MELLWQNGQVVMQSQNQRPFRKPPQPP--EANGGDGAISAREIRSSEAENYNNSQHLFMQ 58

Query: 95  EDEMASWLHYPLND--TNFD-QDFCADLLYP 122
           EDEMA+WLHYP+++    FD  DF AD+ YP
Sbjct: 59  EDEMAAWLHYPIHEDPPPFDHHDFGADIFYP 89


>Glyma13g19250.2 
          Length = 302

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 98/207 (47%), Gaps = 23/207 (11%)

Query: 36  MELLWQNGQVVVQSQTQMSLKKLPHSKYDDAVLPVEASNTREIRSTQ-EHHQQQQHLFMQ 94
           MELLWQNGQVV+QSQ Q   +K P     +A     A + REIRS++ E++   QHLFMQ
Sbjct: 1   MELLWQNGQVVMQSQNQRPFRKPPQPP--EANGGDGAISAREIRSSEAENYNNSQHLFMQ 58

Query: 95  EDEMASWLHYPLND--TNFD-QDFCADLLYPXXXXXXXXXXXXXXXXXXXIQNXXXXXXX 151
           EDEMA+WLHYP+++    FD  DF AD+ YP                   +Q+       
Sbjct: 59  EDEMAAWLHYPIHEDPPPFDHHDFGADIFYP-----PPNATASQNRGSAAVQS----SFR 109

Query: 152 XXXXXXXXXXXXXXXXXXXXXXXXXVHNFAYFSKHRARGGVLEPGPSNLRHAVRESTVVD 211
                                    +HNFA+F+KH   G       S+   A  + TVVD
Sbjct: 110 TTELWHPAPRPPIPPPRRPEHAPSRIHNFAHFTKH---GNASS---SSKAAAAAQPTVVD 163

Query: 212 SSDTPAMPSESRVSEAAVARNTAGVSS 238
           S +TP   +E   +E   AR  AG ++
Sbjct: 164 SCETPVATAEH--AETGRARAAAGKTA 188


>Glyma03g32740.1 
          Length = 481

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 48/73 (65%), Gaps = 2/73 (2%)

Query: 36  MELLWQNGQVVVQSQTQMSLKKLPHSKYDDAVLPVEASNTREIRSTQEHHQQQQHLFMQE 95
           MELLW NGQVVVQSQ Q SL+KLP         P   S TREIR   E+    QHLFM E
Sbjct: 1   MELLWHNGQVVVQSQNQRSLRKLPPVTNSHDASPAGPSMTREIRPLVENF--NQHLFMHE 58

Query: 96  DEMASWLHYPLND 108
            EMASWLHYP++D
Sbjct: 59  GEMASWLHYPIDD 71


>Glyma18g14530.1 
          Length = 520

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 15/122 (12%)

Query: 1   MNHYVPDFEMDEDCAIPTSSTFTRPKKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLPH 60
           MN+ VPD+    D  +   +T  + K  I  + E++EL WQNGQVV+ SQT        H
Sbjct: 1   MNNSVPDWNFGSDSCV---TTTNQKKPMIGVDQELVELQWQNGQVVMHSQT--------H 49

Query: 61  SK-YDDAVLPVEA-SNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFCAD 118
            K + +++ P     N +    T E      +L +Q+DE  SW+ YPL D   +Q+FC++
Sbjct: 50  RKPFVNSITPRPLRRNFQSTLRTSEPFGNSSNL-IQDDETVSWIQYPLEDP-LEQEFCSN 107

Query: 119 LL 120
           LL
Sbjct: 108 LL 109


>Glyma02g45150.2 
          Length = 562

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 15/120 (12%)

Query: 1   MNHYVPDFEMDEDCAIPTSSTFTRPKKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLPH 60
           MN+ +P ++ + D  +      T  +K I  + E++ELLW+NGQVV+ +QT    K L +
Sbjct: 1   MNNSIPGWDFESDTCL------TNQRKLIGPDQELVELLWKNGQVVMHNQTHR--KTLGN 52

Query: 61  SKYDDAVLPVEASNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFCADLL 120
           S     +  V+ S+   +RS+  +        + +++ A W+ +PL D   +QDFC++LL
Sbjct: 53  S---SNLRQVQKSDQSVLRSSGPYGNSSN---LDQEDAAPWVQFPLEDP-LEQDFCSNLL 105


>Glyma02g45150.1 
          Length = 562

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 15/120 (12%)

Query: 1   MNHYVPDFEMDEDCAIPTSSTFTRPKKSITSEDEIMELLWQNGQVVVQSQTQMSLKKLPH 60
           MN+ +P ++ + D  +      T  +K I  + E++ELLW+NGQVV+ +QT    K L +
Sbjct: 1   MNNSIPGWDFESDTCL------TNQRKLIGPDQELVELLWKNGQVVMHNQTHR--KTLGN 52

Query: 61  SKYDDAVLPVEASNTREIRSTQEHHQQQQHLFMQEDEMASWLHYPLNDTNFDQDFCADLL 120
           S     +  V+ S+   +RS+  +        + +++ A W+ +PL D   +QDFC++LL
Sbjct: 53  S---SNLRQVQKSDQSVLRSSGPYGNSSN---LDQEDAAPWVQFPLEDP-LEQDFCSNLL 105