Jatropha Genome Database

JcCB0142841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0142841.10 + phase: 2 /pseudo/partial
         (139 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g41520.1                                                       198   1e-51
Glyma15g03870.1                                                       133   7e-32
Glyma02g44000.2                                                        61   4e-10
Glyma02g44000.3                                                        60   6e-10
Glyma14g04950.1                                                        58   2e-09
Glyma02g44000.1                                                        58   3e-09

>Glyma13g41520.1 
          Length = 1380

 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 92/109 (84%), Positives = 100/109 (91%)

Query: 31   GWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 90
            G LYT GPGAYKIPS+NDVPFKF VSLLKGHPNVKAIHSSKAVGEPPFFLASAV FAIKD
Sbjct: 1272 GCLYTCGPGAYKIPSVNDVPFKFNVSLLKGHPNVKAIHSSKAVGEPPFFLASAVLFAIKD 1331

Query: 91   AIKAARAEVGHHEWFPLDNPATPERIRMACLDEFTAPFINSDYRPKLSV 139
            AI AAR+E+GH+EWFPLD+PATPERIRMACLDE  + F+NSD+ PKLSV
Sbjct: 1332 AIIAARSEMGHNEWFPLDSPATPERIRMACLDELLSSFVNSDFHPKLSV 1380


>Glyma15g03870.1 
          Length = 1356

 Score =  133 bits (334), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 62/74 (83%), Positives = 68/74 (91%)

Query: 66   AIHSSKAVGEPPFFLASAVFFAIKDAIKAARAEVGHHEWFPLDNPATPERIRMACLDEFT 125
            AIHSSKAVGEPPFFLASAV FAIKDAI AARAE+G +EWFPLD+PATPERIRMACLDE T
Sbjct: 1283 AIHSSKAVGEPPFFLASAVLFAIKDAIIAARAEMGRNEWFPLDSPATPERIRMACLDELT 1342

Query: 126  APFINSDYRPKLSV 139
            + F+NSD+ PKLSV
Sbjct: 1343 SSFVNSDFHPKLSV 1356


>Glyma02g44000.2 
          Length = 198

 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 31  GWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 90
           G +   G   YKIP+I+ +P +F V +L    + + + SSKA GEPP  LA+++  A + 
Sbjct: 86  GLVLQDGTWNYKIPTIDTIPKQFNVQILNSGHHQQRVLSSKASGEPPLLLAASIHCATRA 145

Query: 91  AIKAARAEV-------GHHEWFPLDNPATPERIRMAC 120
           A+K AR ++       G    F L  PAT   ++  C
Sbjct: 146 AVKEARKQLLSWSNQDGEDSTFQLGVPATMPVVKELC 182


>Glyma02g44000.3 
          Length = 1366

 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 31   GWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 90
            G +   G   YKIP+I+ +P +F V +L    + + + SSKA GEPP  LA+++  A + 
Sbjct: 1255 GLVLQDGTWNYKIPTIDTIPKQFNVQILNSGHHQQRVLSSKASGEPPLLLAASIHCATRA 1314

Query: 91   AIKAARAEV-------GHHEWFPLDNPATPERIRMAC 120
            A+K AR ++       G    F L  PAT   ++  C
Sbjct: 1315 AVKEARKQLLSWSNQDGEDSTFQLGVPATMPVVKELC 1351


>Glyma14g04950.1 
          Length = 1370

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 31   GWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 90
            G +   G   YKIP+I+ +P +F V +L    + K + SSKA GEPP  LA+++  A + 
Sbjct: 1253 GLVLQDGTWNYKIPTIDTIPKQFNVQILNSGHHQKRVLSSKASGEPPLLLAASIHCATRA 1312

Query: 91   AIKAARAEV-------GHHEWFPLDNPATPERIRMAC 120
            A+K AR ++            F L  PAT   ++  C
Sbjct: 1313 AVKEARKQLLSWSNQDEEDSTFQLGVPATMPVVKELC 1349


>Glyma02g44000.1 
          Length = 1367

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 31   GWLYTSGPGAYKIPSINDVPFKFKVSLLKGHPNVKAIHSSKAVGEPPFFLASAVFFAIKD 90
            G +   G   YKIP+++ +P KF V +L    + + + SSKA GEPP  LA++V  A + 
Sbjct: 1255 GLILVDGTWNYKIPTLDTIPQKFNVQILNSEHHQQRVLSSKASGEPPLLLAASVHCATRA 1314

Query: 91   AIKAARAEV-------GHHEWFPLDNPATPERIRMAC 120
            A K A+ ++       G    F L  PAT   ++  C
Sbjct: 1315 AAKEAKKQLLSWSNLDGPDSTFQLKVPATMPVVKELC 1351