Jatropha Genome Database

JcCB0136181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0136181.20 - phase: 0 /pseudo/partial
         (213 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g37450.1                                                       103   1e-22
Glyma08g43120.1                                                        85   5e-17
Glyma18g10760.1                                                        80   1e-15
Glyma06g14000.1                                                        55   7e-08
Glyma04g40790.1                                                        52   4e-07

>Glyma11g37450.1 
          Length = 235

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 63/94 (67%), Gaps = 2/94 (2%)

Query: 61  RTAPVAPVGLWDRFPTARTVQQXXXXXXXXXXDPFAY-TGTWPSEP-PSPVERSGYSRGR 118
           + AP  PVGLWDRFPTARTVQ+          DPFA+ T  WPS P PS        RGR
Sbjct: 60  KVAPTPPVGLWDRFPTARTVQEMMETMERMMEDPFAFSTLEWPSSPLPSEGVGGYRRRGR 119

Query: 119 TPWEIKEGETEYKMRFDMPGMTKEDVKVWVKRRC 152
            PWEIKE E+EYKMRFDMPGM KEDVKVWV+ + 
Sbjct: 120 APWEIKECESEYKMRFDMPGMNKEDVKVWVEEKM 153


>Glyma08g43120.1 
          Length = 226

 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 51/89 (57%), Gaps = 3/89 (3%)

Query: 66  APVGLWDRFPTARTVQQXXXXXXXXXXDPFAYTGTWPSEPPSPVERSGYSRGRTPWEIKE 125
           +P  L ++FP ARTVQQ          DP  Y  T    P   V    YS+G+ PW IKE
Sbjct: 69  SPKVLLNQFPVARTVQQMMDTMERMVEDPLVYGST---SPLIVVGDDEYSKGKIPWAIKE 125

Query: 126 GETEYKMRFDMPGMTKEDVKVWVKRRCWF 154
           G+ +YKMRF+MPGM K DVKVWV++    
Sbjct: 126 GQKDYKMRFNMPGMNKNDVKVWVEQNMLV 154


>Glyma18g10760.1 
          Length = 211

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 9/86 (10%)

Query: 66  APVGLWDRFPTARTVQQXXXXXXXXXXDPFAYTGTWPSEPPSPVERSG---YSRGRTPWE 122
           +P  L ++FP ARTVQQ          D   Y  T      SPV  +G   YS+G+ PW 
Sbjct: 54  SPKVLLNQFPVARTVQQMMDTMERMGEDLLVYGRT------SPVIVAGDDEYSKGKIPWA 107

Query: 123 IKEGETEYKMRFDMPGMTKEDVKVWV 148
           IKEG+ +YKMRF+MPGM K DVKVWV
Sbjct: 108 IKEGQKDYKMRFNMPGMNKNDVKVWV 133


>Glyma06g14000.1 
          Length = 231

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 65  VAPVGLWDRFPTARTVQQXXXXXXXXXXDPFAYTGTWPSEPPSPVERSGYSRGRTPWEIK 124
           ++P GL D +   R+++Q          D   + G             G    R PW+IK
Sbjct: 84  ISPFGLLDPWSPMRSMRQILDTMDRIFEDTMTFPG----------RNVGAGEIRAPWDIK 133

Query: 125 EGETEYKMRFDMPGMTKEDVKVWVKRRCWFESRGGAREK 163
           + E E +MRFDMPG+ KEDVKV V+        G   E+
Sbjct: 134 DEEHEIRMRFDMPGLAKEDVKVSVEDDVLVIKGGHKSEQ 172


>Glyma04g40790.1 
          Length = 231

 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 11/90 (12%)

Query: 61  RTA-PVAPVGLWDRFPTARTVQQXXXXXXXXXXDPFAYTGTWPSEPPSPVERSGYSRGRT 119
           RTA  ++P G+ D +   R+++Q          D   + G             G    R 
Sbjct: 79  RTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPG----------RNIGGGEIRA 128

Query: 120 PWEIKEGETEYKMRFDMPGMTKEDVKVWVK 149
           PW+IK+ E E +MRFDMPG+ KEDVKV V+
Sbjct: 129 PWDIKDEEHEIRMRFDMPGLAKEDVKVSVE 158