Jatropha Genome Database

JcCB0135201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0135201.10 + phase: 0 /partial
         (141 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g02170.1                                                       215   1e-56
Glyma05g37380.1                                                       212   1e-55

>Glyma08g02170.1 
          Length = 1430

 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/142 (74%), Positives = 118/142 (83%), Gaps = 1/142 (0%)

Query: 1    TLLSGA-SETAITTVISALSFSPDGEGLIAFSEHGLMIRWWSLGSMWWEKLNRNLVPVQC 59
            TLL  A S T +TT ISALSFSPDGEGL+AFSE+GL+IRWWSLGS WWEKL+RN VPVQC
Sbjct: 1289 TLLPAATSGTMLTTAISALSFSPDGEGLVAFSENGLLIRWWSLGSFWWEKLSRNFVPVQC 1348

Query: 60   TKLIFVPLWEGFSPNSSRTSIMASISGHDRQTNLQENARSLNYADSLKILIQNLDLSYRL 119
            TKLIFVP WEGFSPNSSR+SIMA+I   DRQ N Q+N+R  N+ DS K L+  LDLSYRL
Sbjct: 1349 TKLIFVPPWEGFSPNSSRSSIMANILETDRQMNFQDNSRDSNHGDSPKHLLHTLDLSYRL 1408

Query: 120  EWVGGRKVLLSRHGMELGTFPL 141
            EWV GRKVLL+RHG ELGTF L
Sbjct: 1409 EWVEGRKVLLTRHGHELGTFQL 1430


>Glyma05g37380.1 
          Length = 1429

 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/142 (73%), Positives = 117/142 (82%), Gaps = 1/142 (0%)

Query: 1    TLLSGA-SETAITTVISALSFSPDGEGLIAFSEHGLMIRWWSLGSMWWEKLNRNLVPVQC 59
            TLL  A S T +TT ISALSFSPDGEGL+AFSE+GL+IRWWSLGS WWEKL+RN VPVQC
Sbjct: 1288 TLLPAATSGTMLTTAISALSFSPDGEGLVAFSENGLLIRWWSLGSFWWEKLSRNFVPVQC 1347

Query: 60   TKLIFVPLWEGFSPNSSRTSIMASISGHDRQTNLQENARSLNYADSLKILIQNLDLSYRL 119
            TKLIFVP WEGFSPNSSR+SIMA+I   DRQ N Q+N R  N+ DS K  + +LDLSYRL
Sbjct: 1348 TKLIFVPPWEGFSPNSSRSSIMANILETDRQMNFQDNVRDSNHGDSPKHALHSLDLSYRL 1407

Query: 120  EWVGGRKVLLSRHGMELGTFPL 141
            EWV GRKVLL+RHG +LGTF L
Sbjct: 1408 EWVEGRKVLLTRHGHQLGTFQL 1429