Jatropha Genome Database

JcCB0134471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0134471.10 + phase: 1 /partial
         (286 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g13750.1                                                       306   2e-83
Glyma20g13340.1                                                       302   4e-82

>Glyma13g13750.1 
          Length = 540

 Score =  306 bits (783), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 186/238 (78%), Gaps = 1/238 (0%)

Query: 1   FYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKAITWFLMXXXX 60
           FYDLYKNVPVLKATASR+CGPL DWIETWEMVSR+KYLGTMLFLHNFQKA+ WFL     
Sbjct: 302 FYDLYKNVPVLKATASRICGPLLDWIETWEMVSRVKYLGTMLFLHNFQKAVRWFLAFTHT 361

Query: 61  XXXXXXXXXQPLLEPLMEVLGFLLPMWNVLIEVVENLVSIIWVATDSVFTAVIDLIQIVL 120
                    QPL+E L+E+ GFLLP +  L E+ E++ S+IW+  D+ F  V ++++++ 
Sbjct: 362 MRSFFSFLVQPLVESLVEIFGFLLPSFKFLFELAESIFSVIWLVVDTSFDIVGNVLELLF 421

Query: 121 WPMWFIISMVWTIATSVLYPIFWILWEIFYAPIRMVLAIASFIALIGAWISELIGDLWRS 180
            P WF++++VW+IAT +LYP+FW+LWE  YAP+R+VL I  F+A I + I  ++G+ W+ 
Sbjct: 422 SPFWFVLNVVWSIATCILYPLFWVLWEFLYAPVRLVLVIFGFVASICSHICNMLGNTWQF 481

Query: 181 VSCIFRVASATEATISTYEVSMWRSLWNDLFSQV-FRALRSILNGFVAFFTACNRHRL 237
           VS IF+ A+++EAT+S  EVSMWR+LWNDLFSQV FRAL+SIL GFVAFFTACNRHRL
Sbjct: 482 VSRIFQFAASSEATVSASEVSMWRTLWNDLFSQVIFRALKSILYGFVAFFTACNRHRL 539


>Glyma20g13340.1 
          Length = 531

 Score =  302 bits (773), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 143/237 (60%), Positives = 185/237 (78%), Gaps = 2/237 (0%)

Query: 1   FYDLYKNVPVLKATASRLCGPLFDWIETWEMVSRIKYLGTMLFLHNFQKAITWFLMXXXX 60
           FYDLYKNVPVLKATASRLCGPL DWIETWEMVSR+KYLGTMLFLHNFQKA+ WFL     
Sbjct: 294 FYDLYKNVPVLKATASRLCGPLLDWIETWEMVSRVKYLGTMLFLHNFQKAVRWFLAFTHT 353

Query: 61  XXXXXXXXXQPLLEPLMEVLGFLLPMWNVLIEVVENLVSIIWVATDSVFTAVIDLIQIVL 120
                    QPL+E L+E+ GFLLP    L E+ E++ S+IW+  D+ F  V ++++++ 
Sbjct: 354 MRSFFSILVQPLVESLVEIFGFLLPSLKFLFELAESIFSVIWLVVDTSFDIVGNVLELLF 413

Query: 121 WPMWFIISMVWTIATSVLYPIFWILWEIFYAPIRMVLAIASFIALIGAWISELIGDLWRS 180
            P+WF++++VW+IAT +LYP+FW+LWE+ YAP+R+VL I SF+A I ++I   +G+ W+ 
Sbjct: 414 SPLWFVLNVVWSIATCILYPLFWVLWELLYAPVRLVLVIFSFVASISSYICNTLGNTWQF 473

Query: 181 VSCIFRVASATEATISTYEVSMW-RSLWNDLFSQV-FRALRSILNGFVAFFTACNRH 235
           VS IF+ A+++EAT+S  EVSMW R+LWNDLFSQV FRAL+SIL GF AFFTACNRH
Sbjct: 474 VSSIFQFAASSEATVSVSEVSMWQRTLWNDLFSQVIFRALKSILYGFAAFFTACNRH 530