Jatropha Genome Database

JcCB0133991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0133991.20 - phase: 0 /partial
         (277 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g39340.1                                                       398   e-111
Glyma06g15580.1                                                       311   7e-85

>Glyma04g39340.1 
          Length = 536

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/281 (68%), Positives = 227/281 (80%), Gaps = 6/281 (2%)

Query: 3   KLEPSTSSQGATPPREPSGNHLLTCGRAWAISLTLWSEMSSEILKPYLPSDG--DGTL-- 58
           +L  S SS         + +++LT GRAWAIS+T  S  + EI + ++ + G  D  L  
Sbjct: 256 ELASSNSSSVGDISSPAAYDYILTQGRAWAISITQKSTRNEEISRAFISNGGGMDNNLLY 315

Query: 59  --SLHGRGLNRFWSNIEGYHGPLLFLVSATSGNAHEDNTNVRKWIIGALTQQGFENKDMF 116
             S HGRGL RFWS++EGY GPLL L++A+SG+AHE N+  RKW+IGALT QG ENKD+F
Sbjct: 316 RSSTHGRGLGRFWSHVEGYKGPLLILIAASSGDAHEGNSIDRKWVIGALTDQGLENKDIF 375

Query: 117 YGSSGKLYAICPIFHTFSHSGKDKNFVYSHLHPTRRAYEPHPKPVGIAFGGTIGNERIFI 176
           YG+SG LY+I P+FH F  +GK+KNFVYSHLHPT + Y+PHPKPVG+AFGGT GNERIFI
Sbjct: 376 YGNSGCLYSIDPVFHVFPPTGKEKNFVYSHLHPTGKVYQPHPKPVGVAFGGTPGNERIFI 435

Query: 177 DEDFARVTVRHHAVDKTYQPGSIFPSQGFLPVEALISEVEVWGLGGRTAKEVQASYKKRE 236
           DEDFA+VTVRHHA+DKTY+ GS+FP QGFLPVE LISEVEVWGLGG+ AKEVQ SYKKRE
Sbjct: 436 DEDFAKVTVRHHAIDKTYRSGSLFPDQGFLPVEGLISEVEVWGLGGKVAKEVQNSYKKRE 495

Query: 237 DLFIEQRRKVDLKTFASWEDSPEKMMMDMMSDPNAVRREDR 277
           +LF EQRRKVDLKTFASWEDSPEKMMMDMMSDPNAVR+EDR
Sbjct: 496 ELFTEQRRKVDLKTFASWEDSPEKMMMDMMSDPNAVRKEDR 536


>Glyma06g15580.1 
          Length = 383

 Score =  311 bits (796), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 163/293 (55%), Positives = 200/293 (68%), Gaps = 41/293 (13%)

Query: 3   KLEPSTSSQGATPPREPSGNHLLTCGRAWAISLTLWSEMSSEILKPYLPSDG-------- 54
           +L  S SS G       + +++LT GRAWAIS+T  S +  EI + ++ S+G        
Sbjct: 112 ELPSSNSSSGGDISSTAAYDYILTQGRAWAISITQKSTVKEEISRAFI-SNGVLVSWTLV 170

Query: 55  -----------DGTLSLHGRGLNRFWSNIEGYHGPLLFLVSATSGNAHEDNTNVRKWIIG 103
                       G  S HGRGL RFWS++EGY GPLL L++A+SG+AHE N+  RKW++G
Sbjct: 171 NFLFIFFVVKIRGKSSTHGRGLGRFWSHVEGYRGPLLILIAASSGDAHEGNSIDRKWVVG 230

Query: 104 ALTQQGFENKDMFYGSSGKLYAICPIFHTFSHSGKDKNFVYSHLHPTRRAYEPHPKPVGI 163
           ALT QG ENKD+FYG+SG LY+I P+FH F  +GK+KNFVYSHLHPT + +    + +  
Sbjct: 231 ALTDQGLENKDIFYGNSGCLYSIGPVFHVFPPTGKEKNFVYSHLHPTGKLHLEELREM-- 288

Query: 164 AFGGTIGNERIFIDEDFARVTVRHHAVDKTYQPGSIFPSQGFLPVEALISEVEVWGLGGR 223
                    RIFIDEDFA+V VRHHA++KTY+ GS+ P QGFLPVE LISEVE       
Sbjct: 289 ---------RIFIDEDFAKVNVRHHAIEKTYRSGSLLPDQGFLPVEGLISEVE------- 332

Query: 224 TAKEVQASYKKREDLFIEQRRKVDLKTFASWEDSPEKMMMDMMSDPNAVRRED 276
              EVQ SYKKRE+LF EQRR VDLKTFASWEDSPEKMMMDM+SDPNAVRRED
Sbjct: 333 ---EVQNSYKKREELFTEQRRNVDLKTFASWEDSPEKMMMDMISDPNAVRRED 382