Jatropha Genome Database

JcCB0131911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0131911.10 + phase: 1 /partial
         (198 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g13900.1                                                        74   1e-13

>Glyma15g13900.1 
          Length = 355

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 9/111 (8%)

Query: 81  KSWADIVEEEENQK--LLTGKDLSPCFDDTWGYENEYNDENQDSNIIHNQTCPKSPVDTI 138
           KSWADIVEEE+N++   L+G      FDD  G E  +NDEN+DSNII+  +  ++  +  
Sbjct: 191 KSWADIVEEEQNEEYDFLSG---FTNFDDKNGAE-VFNDENEDSNIIYPSSWLQNLPEWS 246

Query: 139 TEKLEACDIKDGYNTFNHSVSPRNPTARRSLCFNGN--QDYNMRKKNRLQV 187
            +KLE+ D KD Y +   ++  RNPTARRSLCFN     +  + +++RLQ+
Sbjct: 247 NKKLESSDKKDDYAS-ESTILSRNPTARRSLCFNPELIGEKKLTRRSRLQI 296