Jatropha Genome Database

JcCB0125821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125821.20 - phase: 0 /partial
         (101 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g32650.1                                                       161   1e-40
Glyma17g01260.1                                                       157   2e-39
Glyma07g39500.1                                                       157   3e-39
Glyma20g34950.1                                                        75   1e-14

>Glyma10g32650.1 
          Length = 255

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 83/99 (83%)

Query: 1   YKYYIHTEDASAKRLAKLYVATLFTGSLSWLFDRIFCKNISNWPINPQGHALWHVFMGFN 60
           YKYYI+T+D  AK LA+LYVATL  GSL+WL D +FC  IS+WPINPQGHALWHVFMGFN
Sbjct: 156 YKYYIYTDDVCAKCLARLYVATLLLGSLAWLSDLVFCNKISSWPINPQGHALWHVFMGFN 215

Query: 61  SYFANTFLMFCRAHQRGWAPKVGYFGGVLPYVKIEKSKK 99
           SYFANTFLMFCRA Q GW+P++    GVLPYVKI+K K+
Sbjct: 216 SYFANTFLMFCRAQQCGWSPRIVRLMGVLPYVKIQKPKR 254


>Glyma17g01260.1 
          Length = 254

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 81/99 (81%), Gaps = 1/99 (1%)

Query: 1   YKYYIHTEDASAKRLAKLYVATLFTGSLSWLFDRIFCKNISNWPINPQGHALWHVFMGFN 60
           YKYYI+T+D SAKRLAKL++ T   GSL    DR+FCK IS WPINPQGHALWHVFMGFN
Sbjct: 156 YKYYIYTQDVSAKRLAKLFLVTFVLGSLFGFCDRVFCKEISRWPINPQGHALWHVFMGFN 215

Query: 61  SYFANTFLMFCRAHQRGWAPKVGYFGGVLPYVKIEKSKK 99
           SYFANTFLMFCRA QRGW+PKV +  GV PYVKIEK K 
Sbjct: 216 SYFANTFLMFCRAQQRGWSPKVLHLMGV-PYVKIEKPKS 253


>Glyma07g39500.1 
          Length = 254

 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 81/99 (81%), Gaps = 1/99 (1%)

Query: 1   YKYYIHTEDASAKRLAKLYVATLFTGSLSWLFDRIFCKNISNWPINPQGHALWHVFMGFN 60
           YKYYI+T+D SAKRLAKL++ T   GSL    DR+FCK IS WPINPQGHALWHVFMGFN
Sbjct: 156 YKYYIYTQDVSAKRLAKLFLGTFVLGSLFGFCDRVFCKEISRWPINPQGHALWHVFMGFN 215

Query: 61  SYFANTFLMFCRAHQRGWAPKVGYFGGVLPYVKIEKSKK 99
           SYFANTFLMFCRA QRGW+PKV +  GV PYVKIEK K 
Sbjct: 216 SYFANTFLMFCRAQQRGWSPKVVHLMGV-PYVKIEKPKS 253


>Glyma20g34950.1 
          Length = 118

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 40/53 (75%)

Query: 1   YKYYIHTEDASAKRLAKLYVATLFTGSLSWLFDRIFCKNISNWPINPQGHALW 53
           YKYYI+T+D  AK LA+LYVATL  GS  WL D +FC  IS+WPINPQG + W
Sbjct: 56  YKYYIYTDDVCAKCLARLYVATLLLGSSGWLSDLVFCNMISSWPINPQGISSW 108