Jatropha Genome Database

JcCB0125821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0125821.10 + phase: 2 /partial
         (138 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g34940.1                                                       219   5e-58
Glyma10g32660.2                                                       215   1e-56
Glyma14g02210.1                                                       203   5e-53
Glyma02g46440.1                                                       197   3e-51
Glyma10g32660.1                                                        88   3e-18

>Glyma20g34940.1 
          Length = 424

 Score =  219 bits (559), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 99/119 (83%), Positives = 112/119 (94%)

Query: 20  FPWKEVSILPVQWHAMCLGLFASIIAPFGGFFASGFKRAFKVKDFGDSIPGHGGITDRMD 79
           F WKE+SILP+QWH++CLGLFASIIAPFGGFFASGFKRAFK+KDFGDSIPGHGGITDRMD
Sbjct: 306 FAWKEISILPIQWHSLCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMD 365

Query: 80  CQMVMAVFAYIYHQSFVVPQSISVEMILDQILTNLTFEEQHALYTKLGEIIQERLVGRS 138
           CQMVMAVFAYIYHQSFVVPQ++SVEMILDQIL NLTF+EQ ALY +LGEI+Q+ +  +S
Sbjct: 366 CQMVMAVFAYIYHQSFVVPQTLSVEMILDQILINLTFDEQEALYWRLGEILQQGITRKS 424


>Glyma10g32660.2 
          Length = 424

 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 97/113 (85%), Positives = 108/113 (95%)

Query: 20  FPWKEVSILPVQWHAMCLGLFASIIAPFGGFFASGFKRAFKVKDFGDSIPGHGGITDRMD 79
           F WKE+SILP+QWH++CLGLFASIIAPFGGFFASGFKRAFK+KDFGDSIPGHGGITDRMD
Sbjct: 306 FSWKEISILPIQWHSLCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMD 365

Query: 80  CQMVMAVFAYIYHQSFVVPQSISVEMILDQILTNLTFEEQHALYTKLGEIIQE 132
           CQMVMAVFAYIYHQSFVVPQ++SVEMILDQI  NLTF+EQ ALY +LGEI+Q+
Sbjct: 366 CQMVMAVFAYIYHQSFVVPQTLSVEMILDQISMNLTFDEQQALYWRLGEILQQ 418


>Glyma14g02210.1 
          Length = 396

 Score =  203 bits (516), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 103/113 (91%)

Query: 21  PWKEVSILPVQWHAMCLGLFASIIAPFGGFFASGFKRAFKVKDFGDSIPGHGGITDRMDC 80
           PWKE+++LPVQWHA+ +GLFASIIAPFGGFFASGFKRAFK+KDFGDSIPGHGG TDRMDC
Sbjct: 282 PWKEIAVLPVQWHALWMGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDC 341

Query: 81  QMVMAVFAYIYHQSFVVPQSISVEMILDQILTNLTFEEQHALYTKLGEIIQER 133
           QMVMAVF YIYHQSFVV Q  SVEM+LDQI+ NL  EEQ +LYTKLG+I+QER
Sbjct: 342 QMVMAVFVYIYHQSFVVGQDYSVEMLLDQIMRNLGSEEQLSLYTKLGKILQER 394


>Glyma02g46440.1 
          Length = 407

 Score =  197 bits (501), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 90/113 (79%), Positives = 101/113 (89%)

Query: 21  PWKEVSILPVQWHAMCLGLFASIIAPFGGFFASGFKRAFKVKDFGDSIPGHGGITDRMDC 80
           PWKE+++LPVQW A+ +GLFASIIAPFGGFFASGFKRAFK+KDFGDSIPGHGG TDRMDC
Sbjct: 293 PWKEIAVLPVQWDALWMGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDC 352

Query: 81  QMVMAVFAYIYHQSFVVPQSISVEMILDQILTNLTFEEQHALYTKLGEIIQER 133
           QMVMAVF YIYHQSFVV Q  SVE +LDQI+ NL  EEQ +LYTKLG+I+QER
Sbjct: 353 QMVMAVFVYIYHQSFVVGQDYSVETLLDQIMRNLGSEEQLSLYTKLGQILQER 405


>Glyma10g32660.1 
          Length = 424

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 42/43 (97%)

Query: 20  FPWKEVSILPVQWHAMCLGLFASIIAPFGGFFASGFKRAFKVK 62
           F WKE+SILP+QWH++CLGLFASIIAPFGGFFASGFKRAFK+K
Sbjct: 306 FSWKEISILPIQWHSLCLGLFASIIAPFGGFFASGFKRAFKIK 348