Jatropha Genome Database

JcCB0124021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0124021.20 - phase: 0 /partial
         (550 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g43000.1                                                       671   0.0  
Glyma12g15360.1                                                       600   e-171
Glyma17g31940.1                                                        51   3e-06
Glyma14g14410.1                                                        50   6e-06

>Glyma06g43000.1 
          Length = 701

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/540 (63%), Positives = 405/540 (75%), Gaps = 24/540 (4%)

Query: 33  EDLPPVLQAYPDVSKSLTCLDLLTVSLTDGFKAHEIRVITAACTNLTKFLVVCMFDPSYL 92
           ED+P VL A P  +  L  L+LLT SLT+GFK+HEI  ITA+C NL  FL VC FD  Y+
Sbjct: 164 EDIPTVLAANPISAAFLRRLNLLTTSLTEGFKSHEIESITASCPNLEHFLAVCNFDRRYI 223

Query: 93  GFIGDETLLAIAANCPKLSVLHLVDTSSLGNTRHDPEDEGYTGEDARISVVGLVDFFSGL 152
           G + D+TL++IA+NCPKLS+LHL DTSS  + R   EDEG+ GEDA IS   L+  FSGL
Sbjct: 224 GSVSDDTLVSIASNCPKLSLLHLADTSSFSSRRE--EDEGFDGEDASISRAALMTLFSGL 281

Query: 153 PXXXXXXXXXXKNVRDSAVAFEALNSRCPKLKVLNLEQFHGICMAVESQLDGIALCSGLE 212
           P          KNVR+S+ AFE + S+CP L+VL L QF GIC+A ES+LDGIALC GL+
Sbjct: 282 PLLEELVLDVCKNVRESSFAFEVVGSKCPNLRVLKLGQFQGICLAFESRLDGIALCHGLQ 341

Query: 213 SLSIKKAADLTDMGLIEIARGCHKLAKFEVEGCKKITMKGIRTMASLLHKTLIEVKISAC 272
           SLS+   ADL DMGLIEIARGC +L +FE++GC+ +T +G+RTMA LL +TLI+V++S C
Sbjct: 342 SLSVGNCADLDDMGLIEIARGCSRLVRFELQGCRLVTERGLRTMACLLGRTLIDVRVSCC 401

Query: 273 KNLDTAAILRALEPIRSRIERLHIDCIWDGLPESTCAANH--SFNLN------------D 318
            NLDTAA LRALEPIR +IERLH+DC+W+GL ES    +   SF+LN            D
Sbjct: 402 VNLDTAATLRALEPIREQIERLHVDCVWNGLKESDGLGHGFLSFDLNGLDEQDDVGKLMD 461

Query: 319 NLFD----ESSSKNKRLKYSSDAR----YVESDLDGFWCKSWDKLRYLSLWIGVGELLNP 370
             F     E++SK KR +     R    ++ES+ +GF+ KSWDKL+YLSLWI VG+LL P
Sbjct: 462 YYFGGGECENTSKRKRQRCEYQMRVHDSFLESNGNGFYGKSWDKLQYLSLWIKVGDLLTP 521

Query: 371 LPMAGLEDCPSLEEIRIRVEGDCRGRHKPLQHAFGLSCLAQYHRLSKMQLDCSDTIGFAL 430
           LP+AGLEDCP LEEIRI+VEGDCRG+ KP +  FGLS LA Y +L KMQLDC DT G+AL
Sbjct: 522 LPVAGLEDCPVLEEIRIKVEGDCRGQPKPAESEFGLSILACYPQLLKMQLDCGDTKGYAL 581

Query: 431 TAPSGQMDLSLWERFFLNGIGNLSLNELDYWPPQDRDVNQRSLSLPGAGLLAECLTLRKL 490
           TAPSGQMDLSLWERF LNGIG+LSL+EL YWPPQD DVNQRS+SLP AGLL EC TLRKL
Sbjct: 582 TAPSGQMDLSLWERFLLNGIGSLSLSELHYWPPQDEDVNQRSVSLPAAGLLQECYTLRKL 641

Query: 491 FIHGTAHEHFMMFLLRIPNLRDVQLREDYYPAPENDMSTEMRADSCCRFEDALNRRHILD 550
           FIHGTAHEHFM F L+I NLRDVQLREDYYPAPENDMSTEMR  SC RFEDALNRR I D
Sbjct: 642 FIHGTAHEHFMNFFLKIQNLRDVQLREDYYPAPENDMSTEMRVGSCSRFEDALNRRRICD 701


>Glyma12g15360.1 
          Length = 688

 Score =  600 bits (1547), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 306/508 (60%), Positives = 363/508 (71%), Gaps = 37/508 (7%)

Query: 28  FLLLDEDLPPVLQAYPDVSKSLTCLDLLTVSLTDGFKAHEIRVITAACTNLTKFLVVCMF 87
           F    ED+P VL A P  + +L  L+LLT SL +GFKAHEI  ITA+C NL  FLVVC F
Sbjct: 171 FYHWTEDIPKVLAANPISAATLRRLNLLTTSLPEGFKAHEIESITASCPNLEHFLVVCTF 230

Query: 88  DPSYLGFIGDETLLAIAANCPKLSVLHLVDTSSLGNTRHDPEDEGYTGEDARISVVGLVD 147
            P Y+GF+ D+TL+AI +NCPKLS+LHL DTSS  N R   EDEG+ GEDA +S   L+ 
Sbjct: 231 HPRYIGFVSDDTLVAIPSNCPKLSLLHLADTSSFLNRR---EDEGFDGEDASVSRAALLT 287

Query: 148 FFSGLPXXXXXXXXXXKNVRDSAVAFEALNSRCPKLKVLNLEQFHGICMAVESQLDGIAL 207
            FSGLP          KNVR+S+ A E L S+CP L+VL L QF GIC+A  S+LDGIAL
Sbjct: 288 LFSGLPLLEELVLDVCKNVRESSFALEVLGSKCPNLRVLKLGQFQGICLAFGSRLDGIAL 347

Query: 208 CSGLESLSIKKAADLTDMGLIEIARGCHKLAKFEVEGCKKITMKGIRTMASLLHKTLIEV 267
           C GL+SLS+   ADL DMGLIEIARGC +L +FE++GC+ +T +G+RTMA LL +TLI+V
Sbjct: 348 CHGLQSLSVGNCADLDDMGLIEIARGCSRLVRFELQGCRLVTERGLRTMACLLARTLIDV 407

Query: 268 KISACKNLDTAAILRALEPIRSRIERLHIDCIWDGLPESTCAANHSFNLNDNLFDESSS- 326
           K+S C NLDTAA LRALEPIR RIERLH+DC+W+GL ES    +   N + N  + ++  
Sbjct: 408 KVSCCVNLDTAATLRALEPIRERIERLHVDCVWNGLKESDGLGHGFLNFDLNECENATKR 467

Query: 327 KNKRLKYSSDAR--YVESDLDGFWCKSWDKLRYLSLWIGVGELLNPLPMAGLEDCPSLEE 384
           K +R +Y       +++S+ +GF  KSWDKL+YLSLWI VG+LL PLP+AGLEDCP LEE
Sbjct: 468 KRQRCEYEMGVHDSFLQSNGNGFCGKSWDKLQYLSLWIKVGDLLTPLPVAGLEDCPVLEE 527

Query: 385 IRIRVEGDCRGRHKPLQHAFGLSCLAQYHRLSKMQLDCSDTIGFALTAPSGQMDLSLWER 444
           IRI+                               LDC DT G+ALTAPSGQMDLSLWER
Sbjct: 528 IRIK-------------------------------LDCGDTKGYALTAPSGQMDLSLWER 556

Query: 445 FFLNGIGNLSLNELDYWPPQDRDVNQRSLSLPGAGLLAECLTLRKLFIHGTAHEHFMMFL 504
           F LNGIG+LSL EL YWPPQD DVNQRS+SLP AGLL EC TLRKLFIHGTAHEHFM F 
Sbjct: 557 FLLNGIGSLSLGELHYWPPQDEDVNQRSVSLPAAGLLQECYTLRKLFIHGTAHEHFMNFF 616

Query: 505 LRIPNLRDVQLREDYYPAPENDMSTEMR 532
           L+IPNLRDVQLREDYYPAPENDMSTEMR
Sbjct: 617 LKIPNLRDVQLREDYYPAPENDMSTEMR 644


>Glyma17g31940.1 
          Length = 610

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 208 CSGLESLSIKKAADLTDMGLIEIARGCHKLAKFEVEGCKKITMKGIRTMASLLHKTLIEV 267
           C  L++LS+   A + D GLIEIA GCH+L K ++  C  IT K +  +A    + L E+
Sbjct: 189 CPSLKALSLWNVATVGDEGLIEIANGCHQLEKLDLCKCPAITDKALVAIAKNC-QNLTEL 247

Query: 268 KISACKNLDTAAILRALEPIRSRIERLHI-DC 298
              +C N+     LRA+  + S ++ + I DC
Sbjct: 248 SFESCPNIGNEG-LRAIGKLCSNLKSISIKDC 278


>Glyma14g14410.1 
          Length = 644

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 6/136 (4%)

Query: 165 NVRDSAVAFEALNSRCPKLKVLNLEQFHGICMAVESQLDGIAL-CSGLESLSIKKAADLT 223
           +VR +A+A    +SR   L  L++   + +C      L  +A  C  L++LS+   A + 
Sbjct: 147 DVRLAAIAV-GTSSR-GGLGKLSIRGSNIVCGVTSHGLKAVARGCPSLKALSLWNVATVG 204

Query: 224 DMGLIEIARGCHKLAKFEVEGCKKITMKGIRTMASLLHKTLIEVKISACKNLDTAAILRA 283
           D GLIEIA GCH+L K ++  C  IT K +  +A    + L E+ + +C N+    +L A
Sbjct: 205 DEGLIEIANGCHQLEKLDLCKCPAITDKALVAIAKNC-QNLTELSLESCPNIGNEGLL-A 262

Query: 284 LEPIRSRIERLHI-DC 298
           +  + S +  + I DC
Sbjct: 263 IGKLCSNLRFISIKDC 278