Jatropha Genome Database

JcCB0122531.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0122531.20 - phase: 1 /partial
         (136 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g25840.1                                                        91   2e-19
Glyma15g36130.1                                                        89   1e-18
Glyma02g44480.1                                                        71   3e-13
Glyma14g04330.1                                                        67   4e-12
Glyma20g08920.1                                                        63   7e-11
Glyma13g04140.1                                                        60   5e-10

>Glyma13g25840.1 
          Length = 622

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 59/100 (59%), Gaps = 8/100 (8%)

Query: 36  AHVDWNTG-VMPEFDYNSIDWTLDNNMXXXXXXXXXXXXXXXXXXXXXTRMNSMNSSCIS 94
           +H+DWN G  MPEFDY SIDW+L+                         R     S C+S
Sbjct: 528 SHMDWNAGGFMPEFDYTSIDWSLNAPSSSVSGGLRLGISSVLRNSYGDRR----GSQCVS 583

Query: 95  GLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSP 134
           GL+ A   +ETSSS GL EWT+PFAGKDIFS+PRQFVTSP
Sbjct: 584 GLQMA---RETSSSGGLREWTTPFAGKDIFSVPRQFVTSP 620


>Glyma15g36130.1 
          Length = 636

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 60/100 (60%), Gaps = 8/100 (8%)

Query: 36  AHVDWNT-GVMPEFDYNSIDWTLDNNMXXXXXXXXXXXXXXXXXXXXXTRMNSMNSSCIS 94
           +H+DWNT G MPEFDY+SIDW+L+                         R     S C+S
Sbjct: 542 SHMDWNTVGFMPEFDYSSIDWSLNAPSSSVSGGLWLGISSMLRNSYGDRR----GSQCMS 597

Query: 95  GLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSP 134
           GL+ A   +ETSSS GL EWT+PFAGKDIF +PRQFVTSP
Sbjct: 598 GLQMA---RETSSSGGLREWTTPFAGKDIFRVPRQFVTSP 634


>Glyma02g44480.1 
          Length = 650

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 20/117 (17%)

Query: 38  VDWNTGVMPEFDYNSIDWTLDNNMXXXXXX-------------------XXXXXXXXXXX 78
           VDW+TG   +FDY +IDW+LD ++                                    
Sbjct: 534 VDWSTGGTMQFDYTNIDWSLDRSLASPRSNGLWLGFSPFLRSNSAPMYDANTSGVVAQSS 593

Query: 79  XXXXTRMNSMNSSCISGLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSPS 135
                   SMN+  + GL+D G     +S+AG  EW+SPF GKD+FSLPRQFV+SPS
Sbjct: 594 MRPVPSNGSMNA-PMPGLQDGGVASAETSTAGSREWSSPFEGKDLFSLPRQFVSSPS 649


>Glyma14g04330.1 
          Length = 649

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 58/117 (49%), Gaps = 21/117 (17%)

Query: 38  VDWNTGVMPEFDYNSIDWTLDNNMXX-------------XXXXXXXXXXXXXXXXXXXTR 84
           VDW+TG   +FDY +IDW+LD ++                                  + 
Sbjct: 534 VDWSTGGTVQFDYTNIDWSLDRSLASPRSNGLWLGFSPFSRSSSAQMYDSNALGVVAESS 593

Query: 85  MN------SMNSSCISGLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSPS 135
           M       SMN+    GL+D  A+ ETS+ AG  EW SPF GKD+FSLPRQFV+SPS
Sbjct: 594 MRPVPTNRSMNAPR-PGLQDGVASAETSA-AGSREWGSPFEGKDLFSLPRQFVSSPS 648


>Glyma20g08920.1 
          Length = 649

 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 18/114 (15%)

Query: 38  VDWNTGVMPEFDYNSIDWTLDNNMX--------------XXXXXXXXXXXXXXXXXXXXT 83
           VDW+TG   +FDY +IDW+LD  +                                    
Sbjct: 537 VDWSTGGTMQFDYTNIDWSLDRGLSPPRSNALLFGLSPFTKSSSTLYGSNASGTVAQQAI 596

Query: 84  RMNSMNSSCIS--GLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSPS 135
           R    N S +   GL++ G +  ++  +G  +W+SPF GKD+FSLPRQFV+SPS
Sbjct: 597 RSLPSNGSMVPLPGLQEGGVS--SAEPSGSRDWSSPFEGKDLFSLPRQFVSSPS 648


>Glyma13g04140.1 
          Length = 648

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 18/114 (15%)

Query: 38  VDWNTGVMPEFDYNSIDWTLDNNMXXX------------XXXXXXXXXXXXXXXXXXTRM 85
           VDW+TG   +FDY +IDW+LD  +                                 T +
Sbjct: 536 VDWSTGGTMQFDYTNIDWSLDRGLSPPRSNALLFGLSPFTKSSSTLYGSNASGTVAQTTV 595

Query: 86  NSMNSSC----ISGLRDAGATKETSSSAGLHEWTSPFAGKDIFSLPRQFVTSPS 135
            S+ S+     + GL++   +  ++ ++G  +W+SPF GKD+FSLPRQFV+SPS
Sbjct: 596 RSLPSNGSMVPLPGLQNGVVS--SAETSGSRDWSSPFEGKDLFSLPRQFVSSPS 647