Jatropha Genome Database

JcCB0121351.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0121351.20 + phase: 0 
         (142 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g12080.2                                                        50   6e-07
Glyma16g12080.1                                                        50   6e-07
Glyma16g12080.3                                                        50   6e-07
Glyma08g36370.2                                                        50   9e-07
Glyma08g36370.1                                                        50   9e-07
Glyma02g14040.1                                                        49   2e-06

>Glyma16g12080.2 
          Length = 311

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query: 10 LDWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFEP 47
          LDW  ES P   DF ++P FALFFP +R FLD FIFE 
Sbjct: 11 LDWHNESYPAYHDFYLLPIFALFFPSLRFFLDRFIFEK 48


>Glyma16g12080.1 
          Length = 311

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query: 10 LDWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFEP 47
          LDW  ES P   DF ++P FALFFP +R FLD FIFE 
Sbjct: 11 LDWHNESYPAYHDFYLLPIFALFFPSLRFFLDRFIFEK 48


>Glyma16g12080.3 
          Length = 249

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query: 10 LDWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFEP 47
          LDW  ES P   DF ++P FALFFP +R FLD FIFE 
Sbjct: 11 LDWHNESYPAYHDFYLLPIFALFFPSLRFFLDRFIFEK 48


>Glyma08g36370.2 
          Length = 309

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query: 10 LDWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFEP 47
          LDW  E  PT  DF ++P FALFFP +R FLD FIFE 
Sbjct: 11 LDWHNEFYPTYHDFYLLPLFALFFPSLRFFLDRFIFEK 48


>Glyma08g36370.1 
          Length = 309

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 26/38 (68%)

Query: 10 LDWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFEP 47
          LDW  E  PT  DF ++P FALFFP +R FLD FIFE 
Sbjct: 11 LDWHNEFYPTYHDFYLLPLFALFFPSLRFFLDRFIFEK 48


>Glyma02g14040.1 
          Length = 312

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query: 11 DWEYESDPTPSDFMIVPFFALFFPLVRLFLDTFIFE 46
          +W +ES P   DF ++PFFALFFP +R  LDTF+FE
Sbjct: 15 NWNHESYPDFRDFSVIPFFALFFPSLRFLLDTFLFE 50