Jatropha Genome Database

JcCB0118121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0118121.10 + phase: 2 /pseudo/partial
         (645 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g33900.1                                                       124   3e-28
Glyma12g29920.1                                                        76   1e-13

>Glyma03g33900.1 
          Length = 1587

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 125/206 (60%), Gaps = 23/206 (11%)

Query: 67  DLELLKSIAWRTIIIDECQRSSISRDFKQFKMIAADMRLL-ISSQVKDNSAHYISMLSLI 125
           DL  L+ I W  IIIDECQ+S IS      K++ A+MRLL +S Q+K++ A YI +LSL+
Sbjct: 394 DLHELRCITWEAIIIDECQQSRISGHLDDIKILKAEMRLLLVSGQIKEDQADYIKLLSLL 453

Query: 126 NSREDELNNGNMKIHDSAD--VAKLKEILAPYTAYECKSDSFCYEEYWVPVQLSNVQLEQ 183
            S +   +   ++ + SA   ++ LK  L  Y  ++CKS S  + EYWVP  LS++QLEQ
Sbjct: 454 KSGQHGSSIAQVETYFSASSTISNLKSQLEKYVVFKCKSGSTRFVEYWVPACLSHLQLEQ 513

Query: 184 YCAVLLSNPVLLF---KNDTVDALREIIISIRK------------QSVIREGLPAEEYLD 228
           YC++LLSN +LL    K+D+VDAL ++IISIRK            QS + +GLP EE L+
Sbjct: 514 YCSMLLSNLMLLCSGQKSDSVDALHDLIISIRKCCDHPYLLNPELQSFVTKGLPDEERLN 573

Query: 229 AEIQVA-----LDGILLETFWKNLFV 249
             IQ +     L+ ILLE   + L V
Sbjct: 574 IGIQASGKLQLLEKILLEARSRGLRV 599



 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 85/144 (59%), Gaps = 5/144 (3%)

Query: 269 VQRKSLLKKTK-LKVFRLYSRYTVEERALIHAKKSGSNEINVDYMNRDSCYSLLGWGLAR 327
           +QR S+  + K + VFRLYS +TVEE+ L+ AK+  + + NV  +++  C +LL WG + 
Sbjct: 693 LQRMSISSQFKQITVFRLYSFFTVEEKILMLAKEGIALDSNVRLLSQSICPTLLKWGASY 752

Query: 328 LFNKLDDFHQCKTLASGSKIYSEWPFLDNVLQELLDQLLCNRED-EPSIYSFISKAQQDA 386
           LFNKLDD H    +++   +  +   L +   EL  QL+C  +D +   +SFIS+ QQ+ 
Sbjct: 753 LFNKLDDLH-ASVVSTPDTV--DMSLLCDTTSELSSQLVCGADDTDCHGWSFISRIQQNG 809

Query: 387 GAYTREISVIDEKEVQDTGPPALF 410
           G Y R++ +  E+ ++  G P  F
Sbjct: 810 GEYARDVLLPGERIMKSGGEPCGF 833


>Glyma12g29920.1 
          Length = 664

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 6/161 (3%)

Query: 280 LKVFRLYSRYTVEERALIHAKKSGSNEINVDYMNRDSCYSLLGWGLARLFNKLDDFHQCK 339
           +K+FRLYS +TVEE+ALI +K+    +IN       +C+ LL WG + LF+KL  FH  +
Sbjct: 159 IKIFRLYSSFTVEEKALILSKQCKIFDINSPSWT--TCHMLLMWGASCLFDKLKVFHDGE 216

Query: 340 TLASGSKIYSEWPFLDNVLQELLDQLLCNRED-EPSIYSFISKAQQDAGAYTREISVIDE 398
           T AS  K     P L   + E    L  + E  E S +S + + QQ+   Y    S++ E
Sbjct: 217 TSASNVKSLFGRPLLKEAMHEFSSLLSQDGEHIESSNFSTLLEVQQNGATYHANSSLLGE 276

Query: 399 KEVQDTG--PPALFWDKIFLVGGILVGVFFASHLQESEEKL 437
            +++  G  PP +FW K+ L G      +  S  Q S +K+
Sbjct: 277 LKLRVLGEEPPQIFWTKL-LEGKQFQWKYLNSSSQRSRKKV 316