Jatropha Genome Database

JcCB0115061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0115061.10 - phase: 0 /partial
         (81 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g02050.3                                                       120   3e-28
Glyma12g02050.2                                                       120   3e-28
Glyma12g02050.1                                                       120   3e-28
Glyma11g09750.3                                                       119   6e-28
Glyma11g09750.2                                                       119   6e-28
Glyma11g09750.1                                                       119   6e-28
Glyma11g01270.1                                                       119   1e-27
Glyma01g43800.1                                                       109   7e-25

>Glyma12g02050.3 
          Length = 316

 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%), Gaps = 1/71 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKF ERP  D+M  N+ TDGGE
Sbjct: 218 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFGERPLEDNMTHNL-TDGGE 276

Query: 61  GSSMSNMYQQQ 71
           GSSMS + Q Q
Sbjct: 277 GSSMSGLCQPQ 287


>Glyma12g02050.2 
          Length = 332

 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%), Gaps = 1/71 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKF ERP  D+M  N+ TDGGE
Sbjct: 218 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFGERPLEDNMTHNL-TDGGE 276

Query: 61  GSSMSNMYQQQ 71
           GSSMS + Q Q
Sbjct: 277 GSSMSGLCQPQ 287


>Glyma12g02050.1 
          Length = 333

 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%), Gaps = 1/71 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKF ERP  D+M  N+ TDGGE
Sbjct: 219 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFGERPLEDNMTHNL-TDGGE 277

Query: 61  GSSMSNMYQQQ 71
           GSSMS + Q Q
Sbjct: 278 GSSMSGLCQPQ 288


>Glyma11g09750.3 
          Length = 318

 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%), Gaps = 1/71 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKF ERPQ D+M  N+ TDGGE
Sbjct: 220 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFGERPQDDNMTHNL-TDGGE 278

Query: 61  GSSMSNMYQQQ 71
            SSMS + Q Q
Sbjct: 279 VSSMSGLCQPQ 289


>Glyma11g09750.2 
          Length = 319

 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%), Gaps = 1/71 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKF ERPQ D+M  N+ TDGGE
Sbjct: 221 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFGERPQDDNMTHNL-TDGGE 279

Query: 61  GSSMSNMYQQQ 71
            SSMS + Q Q
Sbjct: 280 VSSMSGLCQPQ 290


>Glyma11g09750.1 
          Length = 335

 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 62/71 (87%), Gaps = 1/71 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKF ERPQ D+M  N+ TDGGE
Sbjct: 221 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFGERPQDDNMTHNL-TDGGE 279

Query: 61  GSSMSNMYQQQ 71
            SSMS + Q Q
Sbjct: 280 VSSMSGLCQPQ 290


>Glyma11g01270.1 
          Length = 337

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/64 (85%), Positives = 59/64 (92%), Gaps = 1/64 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCER Q+D+   N +TDGGE
Sbjct: 242 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNTTDN-STDGGE 300

Query: 61  GSSM 64
           GSS+
Sbjct: 301 GSSI 304


>Glyma01g43800.1 
          Length = 338

 Score =  109 bits (272), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 55/64 (85%), Gaps = 1/64 (1%)

Query: 1   TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQSDDMAPNIATDGGE 60
           TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMK CE   +D+   N  TDGGE
Sbjct: 243 TRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKLCEGSHNDNTTDN-PTDGGE 301

Query: 61  GSSM 64
           GSS+
Sbjct: 302 GSSI 305