Jatropha Genome Database

JcCB0113371.20

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0113371.20 - phase: 0 /partial
         (197 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g16810.1                                                       296   1e-80

>Glyma04g16810.1 
          Length = 436

 Score =  296 bits (757), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 146/196 (74%), Positives = 161/196 (82%), Gaps = 3/196 (1%)

Query: 1   NALTDPQRVRTPSITEYWKPLAEDMDPSAGIEAEYHHKNNRVYCWKGLRFSARQDLDGFS 60
           NALTDPQRV+TPSI EYWKPLAEDMDPSAGIEA+YHHKNNRVYCWKGLR SARQDL+GFS
Sbjct: 243 NALTDPQRVQTPSIMEYWKPLAEDMDPSAGIEADYHHKNNRVYCWKGLRLSARQDLEGFS 302

Query: 61  RFTDHGIEGVVPLELLPPDVRSKYQAKPNDRSKRAKKEEVKGASNQAEDNQITTPASVLD 120
           +FTDHGIEGVVPLELLPPDVRSKYQAKPNDRSKR+KKEE KG ++Q E+NQI T A+ +D
Sbjct: 303 KFTDHGIEGVVPLELLPPDVRSKYQAKPNDRSKRSKKEETKGTAHQIEENQIATNATEID 362

Query: 121 GEGIRTDEXXXXXXXXXXXXXXXXXXQGGTPTPEEHQKQSPDTDGGQEAGQLEADGEGDA 180
           G+GIRTD                   QGGT TPEE QK S DTDGGQEAGQLEAD E +A
Sbjct: 363 GDGIRTD---TTATSMEFDAATAPGTQGGTTTPEELQKLSSDTDGGQEAGQLEADAEVEA 419

Query: 181 ALIDGETDAEVDLEAV 196
            +IDGETDA+VDL+ V
Sbjct: 420 GMIDGETDADVDLDTV 435