Jatropha Genome Database

JcCB0112461.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0112461.20 - phase: 1 /partial
         (150 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g05030.1                                                        59   1e-09
Glyma11g12900.1                                                        53   1e-07
Glyma12g05020.1                                                        49   3e-06

>Glyma12g05030.1 
          Length = 528

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 48/78 (61%), Gaps = 7/78 (8%)

Query: 69  RPLSPYAIYDDLKPPTSPIPAAPLVSIPTSSENGGPKA------GNSAPPTAPEDMQQHT 122
           +PLSPY  Y DLKPPTSP P AP VS+ T +  G P+       G +    A E  ++H 
Sbjct: 439 KPLSPYVAYPDLKPPTSPSPNAPTVSVSTPAAAGVPEIDTISSNGPAQLSAADEPKEEHL 498

Query: 123 -EAKPKPLSPFSMYEDMK 139
            E K +PLSP++MYED+K
Sbjct: 499 PEPKSRPLSPYTMYEDLK 516


>Glyma11g12900.1 
          Length = 491

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 9/90 (10%)

Query: 54  ILAPEEEQQHTEAKP--RPLSPYAIYDDLKPPTSPIPAAPLVSIPTSSENGGPKA----- 106
           +L  + + Q T +    +PLSPY +Y DLKPPTSP P AP VS+ T +  G PK      
Sbjct: 343 VLGVDGDSQTTSSSKVEKPLSPYVVYPDLKPPTSPSPNAPTVSVSTPAAAGVPKIDTISS 402

Query: 107 -GNSAPPTAPEDMQQHT-EAKPKPLSPFSM 134
            G +   TA E  ++H  E K  PLSP+++
Sbjct: 403 NGPAQLSTADEPKKEHLPEPKSTPLSPYTI 432


>Glyma12g05020.1 
          Length = 267

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 22/106 (20%)

Query: 51  SAPILA--PEEEQQHTEAKPRP-----LSPYAI------YDDLKPPTSPIPAAPLVSIPT 97
           SA ++A  P    Q   A+P+P     LSPY +      Y DLKPPTSP P AP +S+ T
Sbjct: 162 SANVVAAEPSVATQKETAQPKPVANQPLSPYTVSCYACRYPDLKPPTSPSPNAPTISVST 221

Query: 98  SSENGGPK----AGNSAPPT----APEDMQQHT-EAKPKPLSPFSM 134
           S+E G P+    + N   P     A E  ++H  E K +PLSP++M
Sbjct: 222 SAEEGVPEIATVSSNGPAPAQLSIADEPKEEHLPEPKSRPLSPYTM 267