Jatropha Genome Database

JcCB0111121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0111121.10 - phase: 0 /partial
         (163 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g06000.1                                                       216   1e-56
Glyma13g16690.1                                                       215   2e-56

>Glyma17g06000.1 
          Length = 304

 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 97/116 (83%), Positives = 107/116 (92%)

Query: 1   MVWFQCEDCGENLKKPKLPNHFRICSASKLSCIDCGEMFGQDSVQGHTQCITEAEKYGPK 60
           MVWFQCEDCG+NLKKPKL +HFR CSA KLSCIDCGE+FG+D+VQ HTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGDNLKKPKLSSHFRTCSAYKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPK 60

Query: 61  GQGKAPNGATPKTNKNAKQQPDVDINVGLSERPPWFCSLCNTKATSKQTLLLHADG 116
           GQGK  N AT K NK++KQ+P+VDINVGLS+RPPWFCSLCNTKATSKQTLLLHADG
Sbjct: 61  GQGKTFNVATAKPNKDSKQRPEVDINVGLSDRPPWFCSLCNTKATSKQTLLLHADG 116


>Glyma13g16690.1 
          Length = 290

 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 96/116 (82%), Positives = 106/116 (91%)

Query: 1   MVWFQCEDCGENLKKPKLPNHFRICSASKLSCIDCGEMFGQDSVQGHTQCITEAEKYGPK 60
           MVWFQCEDCG+NLKKPKL +HFR CSA KLSCIDCGE+FG+D+VQ HTQCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGDNLKKPKLSSHFRTCSAYKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPK 60

Query: 61  GQGKAPNGATPKTNKNAKQQPDVDINVGLSERPPWFCSLCNTKATSKQTLLLHADG 116
           GQGK  N AT   NK++KQ+PD+DINVGLS+RPPWFCSLCNTKATSKQTLLLHADG
Sbjct: 61  GQGKTLNVATANPNKDSKQRPDIDINVGLSDRPPWFCSLCNTKATSKQTLLLHADG 116