Jatropha Genome Database

JcCB0109281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0109281.10 - phase: 0 
         (237 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g04670.1                                                       216   2e-56
Glyma09g11810.1                                                       118   7e-27

>Glyma07g04670.1 
          Length = 171

 Score =  216 bits (549), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/177 (66%), Positives = 135/177 (76%), Gaps = 8/177 (4%)

Query: 42  FKESRLLYEGQSIHSPTNAALLLENIKQETDSIGYTDHFGGTPARTHSTFKRRSSIDSYG 101
             E+ LLY+GQSIHSPTNAAL+LENIKQE +S+        TP   +ST ++ S++   G
Sbjct: 1   LSETGLLYDGQSIHSPTNAALVLENIKQEVESLDADYLEEKTP---YSTRRKLSAVID-G 56

Query: 102 ISEVDLGADSVRRHGSESLKACKIEDDSLTDIGETIFGLFASLLDSAIQGLMPIPDLILR 161
           +  VD G DS    G  SLKACK E DSL D  ETIF LFASLLDS++QGLMPI DLILR
Sbjct: 57  VPGVDAGFDS----GRYSLKACKTEGDSLGDGAETIFTLFASLLDSSLQGLMPIADLILR 112

Query: 162 FEKSCRDVSESIRYGPKIRHRVVEDKLMRQKAQLLLDEAASWSLLWYLYGKGNQSLS 218
            E +CR+VSESIRYG  IRHRVVEDKLMRQKAQLLLDEAA+WSLLW+LYGKGN SL+
Sbjct: 113 VENACRNVSESIRYGLNIRHRVVEDKLMRQKAQLLLDEAATWSLLWFLYGKGNISLT 169


>Glyma09g11810.1 
          Length = 248

 Score =  118 bits (295), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 104/190 (54%), Gaps = 20/190 (10%)

Query: 32  SPHKDISVSKFKESRLLYEGQSIHSPTNAALLLENIKQETDSIGYTDHFGGTPARTHSTF 91
           S   D   SK  E  +LY+GQ IHSP N AL+L+NIKQE  S+        TP  T    
Sbjct: 2   SIQHDNLASKISEIGMLYDGQRIHSPPNVALVLQNIKQEVKSLDVDYLEEKTPYST---- 57

Query: 92  KRRSSIDSYGISEVDL------GADSVRRHGSESLKA-----CKIEDDSLTDIGETIFGL 140
           +R+   D +G+    L        + V++     L       CK   +S   +   I G 
Sbjct: 58  RRKLFADIHGVPRWMLVLTLVTNWEMVQKQSLLYLHLCLILLCK--KNSSPTLAGKIKGE 115

Query: 141 FASLLDSAIQ--GLMPIPDLILRFEKSCRDVSESIRY-GPKIRHRVVEDKLMRQKAQLLL 197
            +   +S  +  GLMPI DLILR E +CR+VSESIR+ G   RHRVVE+K +RQKAQLLL
Sbjct: 116 MSEEENSGERNSGLMPIADLILRVENACRNVSESIRFTGLNTRHRVVEEKFLRQKAQLLL 175

Query: 198 DEAASWSLLW 207
           DEAA+WSL W
Sbjct: 176 DEAATWSLFW 185