Jatropha Genome Database

JcCB0108421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108421.10 - phase: 0 /partial
         (425 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g40060.1                                                       262   5e-70
Glyma12g03270.1                                                       139   4e-33
Glyma11g11070.1                                                       139   5e-33
Glyma06g14800.1                                                        92   9e-19
Glyma06g14790.1                                                        72   2e-12

>Glyma04g40060.1 
          Length = 426

 Score =  262 bits (670), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 160/238 (67%), Gaps = 24/238 (10%)

Query: 195 TSGEVIAVKDGGGHIGQ-------------------TGTNAVTIAEPDGEMYYSQYLQAT 235
            SG  + VKDGG  IGQ                      N+VT+AE D E YYS YL   
Sbjct: 156 VSGRELLVKDGG-DIGQLVHSNVSGGDEDHRQEGLGKSQNSVTVAETDCEEYYSHYLHGG 214

Query: 236 EGAGSGGKDVGVENGCXXXXXXXXXXXXXXXXXXLRAILSDAVTGALMDDAMILPCGHSF 295
           EGA SG K +  ++GC                  LRAILSD VTGALMDDAMILPCGHSF
Sbjct: 215 EGA-SGQKVMVDDSGCGFSGRKDAMYSSESGES-LRAILSDPVTGALMDDAMILPCGHSF 272

Query: 296 GAGGIQHVIRTKACYTCSQSISEDAIAPNLSLRAAVQAFRREEELQFYRSSKRRRERFDQ 355
           G GGI+H IR KAC TCSQ  +E++I+PNLSLR AVQA+RREEE QFYRS KRRRERFDQ
Sbjct: 273 GGGGIEHAIRMKACCTCSQPTTEESISPNLSLRIAVQAYRREEESQFYRSPKRRRERFDQ 332

Query: 356 DKGVYGDSTATDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWFV 413
             G +GDS   +  R RGVQFPFAV DRVIIKGNKRTPQRFVGREA+VTTQCLNGW+V
Sbjct: 333 --GGFGDSVVMEPSRSRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYV 388



 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 56/89 (62%), Gaps = 15/89 (16%)

Query: 1  MSAEEIALVPSQ---NGLNSQLVFQDDPLRFNCGPPQRRVGGDPGPKTTTRELSGFIDD- 56
          MS+E+I LVP Q   NGLNS LVFQDDPLRFNC  P +R  GDP PK  TREL  FIDD 
Sbjct: 1  MSSEDITLVPDQRIENGLNSPLVFQDDPLRFNCPTPHQRRVGDPPPK--TRELGAFIDDN 58

Query: 57 KLFSSPNSXXXXXNDRYFPSHQGGPEFPR 85
          K+F           DR+F + Q  PEF R
Sbjct: 59 KMF--------IDRDRFFAAAQ-NPEFRR 78


>Glyma12g03270.1 
          Length = 477

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 106/153 (69%), Gaps = 10/153 (6%)

Query: 270 LRAILSDAVTGALMDDAMILPCGHSFGAGGIQHVIRTKACYTCSQSISEDAIAPNLSLRA 329
           LR++LSD ++G  ++DAM++ CGHSFG   ++ VI T  C  C+  I   ++ PN +LRA
Sbjct: 288 LRSVLSDPLSGTFLEDAMLVSCGHSFGGLMLRRVIETSRCTLCNAEIETGSLIPNHALRA 347

Query: 330 AVQAFRREEELQFYRSS---KRRRERFDQDKGVY------GDSTATDTPRGRGVQFPFAV 380
           A  A + E++ + +R++   KRR+E  DQ   +       GD  ATD  + RGVQ+PF+V
Sbjct: 348 AAAAVKHEDDRRLFRNAALRKRRKEMGDQMDSMRRVNRENGDFNATDGLQ-RGVQYPFSV 406

Query: 381 TDRVIIKGNKRTPQRFVGREAVVTTQCLNGWFV 413
            ++V+IKGN+RTP++FVG+EAV+T+QCLNGW++
Sbjct: 407 NEKVVIKGNRRTPEKFVGKEAVITSQCLNGWYL 439


>Glyma11g11070.1 
          Length = 585

 Score =  139 bits (351), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 105/153 (68%), Gaps = 10/153 (6%)

Query: 270 LRAILSDAVTGALMDDAMILPCGHSFGAGGIQHVIRTKACYTCSQSISEDAIAPNLSLRA 329
           LR++LSD ++G  ++DAM++ CGHSFG   ++ VI T  C  C+  I   ++ PN +LRA
Sbjct: 396 LRSVLSDPLSGTFLEDAMLVSCGHSFGGLMLRRVIETSKCTLCNVEIETGSLIPNHALRA 455

Query: 330 AVQAFRREEELQFYRSS---KRRRERFDQD------KGVYGDSTATDTPRGRGVQFPFAV 380
           A  A + E++ + +R++   KRR+E  DQ        G  GD TA D  + RGVQ+PF V
Sbjct: 456 AAAAVKHEDDRRLFRNAALRKRRKEMGDQMDSMRRVNGENGDFTAADGLQ-RGVQYPFLV 514

Query: 381 TDRVIIKGNKRTPQRFVGREAVVTTQCLNGWFV 413
            ++V+IKGN+RTP++FVG+EAV+T+QCLNGW++
Sbjct: 515 NEKVVIKGNRRTPEKFVGKEAVITSQCLNGWYL 547


>Glyma06g14800.1 
          Length = 86

 Score = 92.4 bits (228), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/44 (90%), Positives = 42/44 (95%)

Query: 370 RGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWFV 413
           R RGVQFPFAV DRVIIKGNKRTPQRFVGREA+VTTQCLNGW+V
Sbjct: 5   RSRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYV 48


>Glyma06g14790.1 
          Length = 58

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/36 (91%), Positives = 34/36 (94%)

Query: 270 LRAILSDAVTGALMDDAMILPCGHSFGAGGIQHVIR 305
           LRAILSD VTGALMDDA+ILPCGHSFG GGIQHVIR
Sbjct: 10  LRAILSDPVTGALMDDAVILPCGHSFGGGGIQHVIR 45