Jatropha Genome Database

JcCB0108291.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108291.30 + phase: 0 
         (93 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g21450.1                                                        94   3e-20
Glyma13g21450.2                                                        94   4e-20

>Glyma13g21450.1 
          Length = 374

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 55/79 (69%)

Query: 1  MDMGFLLHALIPSWNSVVVLAXXXXYLAIAGSILPGKVVPGVTLQDGSRLYYRCNGXXXX 60
          +D+GFLL AL PSWNSV +L     YLA+AGSILPGK+VPGV L DG+RL+Y CNG    
Sbjct: 6  VDLGFLLQALTPSWNSVPLLVGFFTYLAVAGSILPGKLVPGVALLDGTRLHYCCNGLLSL 65

Query: 61 XXXXXXXGIGAKMDLVSPT 79
                 GIGAKM  VSPT
Sbjct: 66 LLLVALLGIGAKMGFVSPT 84


>Glyma13g21450.2 
          Length = 369

 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 55/79 (69%)

Query: 1  MDMGFLLHALIPSWNSVVVLAXXXXYLAIAGSILPGKVVPGVTLQDGSRLYYRCNGXXXX 60
          +D+GFLL AL PSWNSV +L     YLA+AGSILPGK+VPGV L DG+RL+Y CNG    
Sbjct: 6  VDLGFLLQALTPSWNSVPLLVGFFTYLAVAGSILPGKLVPGVALLDGTRLHYCCNGLLSL 65

Query: 61 XXXXXXXGIGAKMDLVSPT 79
                 GIGAKM  VSPT
Sbjct: 66 LLLVALLGIGAKMGFVSPT 84