Jatropha Genome Database

JcCB0108291.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0108291.20 + phase: 0 /partial
         (81 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g41350.1                                                        52   1e-07
Glyma07g35480.1                                                        52   2e-07
Glyma06g23600.1                                                        52   2e-07

>Glyma08g41350.1 
          Length = 2794

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 6    YSKRVHPRTLKSGDSLLIRLLDHESHSHSRGKFRPNCHGPFKIQKLSDKGAAELVTSEGK 65
            + K+V PR  + GD +L ++L  +  S  RGK+ PN  GP+ +++    GA  L T +G 
Sbjct: 2721 FDKKVRPRVFQEGDLVLKKVLSFQPDS--RGKWTPNYEGPYVVKRTFSGGALTLTTMDGD 2778

Query: 66   PVNRIVSQDQMKRFNV 81
             + R V+ D +K++ V
Sbjct: 2779 ELPRPVNVDAVKKYFV 2794


>Glyma07g35480.1 
          Length = 2270

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 6    YSKRVHPRTLKSGDSLLIRLLDHESHSHSRGKFRPNCHGPFKIQKLSDKGAAELVTSEGK 65
            + K+V PR  + GD +L ++L  +  S  RGK+ PN  GP+ +++    GA  L T +G 
Sbjct: 2197 FDKKVRPRVFQEGDLVLKKVLSFQPDS--RGKWTPNYEGPYVVKRTFSGGALTLTTMDGD 2254

Query: 66   PVNRIVSQDQMKRFNV 81
             + R V+ D +K++ V
Sbjct: 2255 ELPRPVNADAVKKYFV 2270


>Glyma06g23600.1 
          Length = 2196

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 6    YSKRVHPRTLKSGDSLLIRLLDHESHSHSRGKFRPNCHGPFKIQKLSDKGAAELVTSEGK 65
            + K+V PR  + GD +L ++L  +  S  RGK+ PN  GP+ +++    GA  L T +G 
Sbjct: 2123 FDKKVRPRVFQEGDLVLKKVLSFQPDS--RGKWTPNYEGPYVVKRAFSGGALTLTTMDGD 2180

Query: 66   PVNRIVSQDQMKRFNV 81
             + R V+ D +K++ V
Sbjct: 2181 ELPRPVNADAVKKYFV 2196