Jatropha Genome Database

JcCB0107551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0107551.10 - phase: 0 /partial
         (165 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g11950.1                                                       224   4e-59

>Glyma20g11950.1 
          Length = 376

 Score =  224 bits (570), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 128/165 (77%)

Query: 1   MKSIPLILMGCGGVGRQLIQHIVSCRSLHAKQGVHLRVVGVCDSKSLVAASDVFTRELND 60
           MK+IPLILMGCGGVGRQL+QHIVSCRSLH  QG+ LRVVGV DSKSLV   D+    LND
Sbjct: 1   MKNIPLILMGCGGVGRQLLQHIVSCRSLHFTQGLCLRVVGVGDSKSLVVTEDLLHEGLND 60

Query: 61  AFLSEVCRVKLNGSSLSTLADFDECLVYSNSESKRKVIDIAALLGKSTGLAFVDCSASSE 120
            FL E+CRVK  G SL  L DF +C  + + ES+ K+++IA  LGK TGL FVDCSASS+
Sbjct: 61  GFLLELCRVKSVGESLLKLLDFGKCQAFVHPESQGKILEIAFQLGKKTGLVFVDCSASSD 120

Query: 121 TIGVLNQVVDLRCCIVLANKKPLTSTLEDYDKLVSYPRRIRHEST 165
           T+ VL Q +D+ CC V+ANKKPLTST+ED+ KL  YPRRIRHEST
Sbjct: 121 TVAVLKQAIDMGCCAVMANKKPLTSTMEDFKKLFIYPRRIRHEST 165