Jatropha Genome Database

JcCB0106871.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.30 + phase: 0 /partial
         (159 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g16600.1                                                        58   5e-09
Glyma05g10880.1                                                        47   6e-06

>Glyma01g16600.1 
          Length = 2962

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 3   PEPTDSKTTITELIPVMNKITEHKLKGTNYLDWSKTIQIYLRSVEKDDHLIDDPP-TGDT 61
           PE  D      EL    N  + ++L G NYL WS+ I+  L+   K  HL D+ P   D 
Sbjct: 9   PEIGDKFQIAGEL---QNIHSAYRLTGKNYLKWSQLIRSILKGKGKGSHLTDNAPDEKDA 65

Query: 62  R-PRWLREDAKLFLLIRNSIDSEVVGLINHCEFVKELMEYFEFLYSEKYNLSRMYKVCKG 120
           +   W  ED+ +   + NS+  E+       +  KE+ E  E  YS+  + +++Y V   
Sbjct: 66  KFKSWDEEDSMIMAWLWNSMVPEISDTCMFLKSAKEIWEAVEQTYSKAKDAAQIYDVKVK 125

Query: 121 FYRADQQDKPLTAYFMDFKKIYEELN 146
              A Q +K +T Y    K ++ EL+
Sbjct: 126 TLGAKQGNKSVTEYANQLKSLWMELD 151


>Glyma05g10880.1 
          Length = 986

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 14/120 (11%)

Query: 25  HKLKGTNYLDWSKTIQIYLRSVEKDDHLIDDPPTGDTR---------PRWLREDAKLFLL 75
            KL G NY++W++++++ L    K   L     TGDT          PRW  E++ +   
Sbjct: 44  QKLNGKNYVEWAQSVKLTLDGKGKLGCL-----TGDTSQPGVIDPSLPRWKSENSLIIAW 98

Query: 76  IRNSIDSEVVGLINHCEFVKELMEYFEFLYSEKYNLSRMYKVCKGFYRADQQDKPLTAYF 135
           + NS+DS +          K++ E     YS+  N S++Y++    +++ Q D  +T ++
Sbjct: 99  LINSMDSSIRKPYLFLPTAKDVWEAVRDCYSDLENSSQIYELKTQLWQSKQGDNDVTTFY 158