Jatropha Genome Database

JcCB0106871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0106871.20 - phase: 0 /partial
         (89 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g00230.1                                                       167   3e-42
Glyma04g00200.1                                                       166   6e-42

>Glyma06g00230.1 
          Length = 444

 Score =  167 bits (423), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/89 (89%), Positives = 83/89 (93%)

Query: 1   HLDSQLVYPERPGELIAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFNYFEA 60
           HLD + V  ERPGEL AYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFF+YFEA
Sbjct: 165 HLDFEPVQTERPGELTAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFDYFEA 224

Query: 61  AADLLDKDKSIMAVSSWNDNGQKQFVYDP 89
           AA LLDKDKSIMAVSSWNDNGQKQFV+DP
Sbjct: 225 AATLLDKDKSIMAVSSWNDNGQKQFVHDP 253


>Glyma04g00200.1 
          Length = 444

 Score =  166 bits (419), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 79/89 (88%), Positives = 83/89 (93%)

Query: 1   HLDSQLVYPERPGELIAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFNYFEA 60
           HLD + V  ERPGEL AYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFF+YFEA
Sbjct: 165 HLDFEPVQTERPGELTAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFDYFEA 224

Query: 61  AADLLDKDKSIMAVSSWNDNGQKQFVYDP 89
           AA LL+KDKSIMAVSSWNDNGQKQFV+DP
Sbjct: 225 AASLLEKDKSIMAVSSWNDNGQKQFVHDP 253